Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.12■□□□□ 0.81
SHOX2O60902 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
SHOX2O60902 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.12■□□□□ 0.81
SHOX2O60902 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.12■□□□□ 0.81
SHOX2O60902 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.12■□□□□ 0.81
SHOX2O60902 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHOX2O60902 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.11■□□□□ 0.81
SHOX2O60902 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
SHOX2O60902 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHOX2O60902 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHOX2O60902 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHOX2O60902 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHOX2O60902 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
SHOX2O60902 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.11■□□□□ 0.81
SHOX2O60902 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.11■□□□□ 0.81
SHOX2O60902 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.11■□□□□ 0.81
SHOX2O60902 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.11■□□□□ 0.81
SHOX2O60902 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHOX2O60902 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.11■□□□□ 0.81
SHOX2O60902 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHOX2O60902 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.11■□□□□ 0.81
SHOX2O60902 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SHOX2O60902 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHOX2O60902 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHOX2O60902 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHOX2O60902 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.11■□□□□ 0.81
SHOX2O60902 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
SHOX2O60902 AC090164.3-201ENST00000610780 2143 ntBASIC20.11■□□□□ 0.81
SHOX2O60902 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.11■□□□□ 0.81
SHOX2O60902 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
SHOX2O60902 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.1■□□□□ 0.81
SHOX2O60902 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.1■□□□□ 0.81
SHOX2O60902 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SHOX2O60902 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 AC009299.2-201ENST00000482477 511 ntBASIC20.1■□□□□ 0.81
SHOX2O60902 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.1■□□□□ 0.81
SHOX2O60902 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SHOX2O60902 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.1■□□□□ 0.81
SHOX2O60902 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
SHOX2O60902 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SHOX2O60902 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.1■□□□□ 0.81
SHOX2O60902 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHOX2O60902 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SHOX2O60902 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.09■□□□□ 0.81
SHOX2O60902 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.09■□□□□ 0.81
SHOX2O60902 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.09■□□□□ 0.81
SHOX2O60902 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SHOX2O60902 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SHOX2O60902 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.09■□□□□ 0.81
SHOX2O60902 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHOX2O60902 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SHOX2O60902 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SHOX2O60902 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SHOX2O60902 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHOX2O60902 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.08■□□□□ 0.81
SHOX2O60902 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHOX2O60902 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
SHOX2O60902 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SHOX2O60902 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.08■□□□□ 0.81
SHOX2O60902 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHOX2O60902 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHOX2O60902 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SHOX2O60902 DPP3P2-201ENST00000416030 1696 ntBASIC20.08■□□□□ 0.81
SHOX2O60902 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHOX2O60902 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms