Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LMX1BO60663 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1BO60663 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
LMX1BO60663 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1BO60663 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1BO60663 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1BO60663 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.62■□□□□ 0.41
LMX1BO60663 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.62■□□□□ 0.41
LMX1BO60663 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1BO60663 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.62■□□□□ 0.41
LMX1BO60663 MIR4758-201ENST00000577688 71 ntBASIC17.62■□□□□ 0.41
LMX1BO60663 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
LMX1BO60663 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.62■□□□□ 0.41
LMX1BO60663 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
LMX1BO60663 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1BO60663 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1BO60663 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1BO60663 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1BO60663 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.61■□□□□ 0.41
LMX1BO60663 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.61■□□□□ 0.41
LMX1BO60663 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.61■□□□□ 0.41
LMX1BO60663 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.61■□□□□ 0.41
LMX1BO60663 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.61■□□□□ 0.41
LMX1BO60663 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.61■□□□□ 0.41
LMX1BO60663 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.61■□□□□ 0.41
LMX1BO60663 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.61■□□□□ 0.41
LMX1BO60663 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
LMX1BO60663 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.61■□□□□ 0.41
LMX1BO60663 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.61■□□□□ 0.41
LMX1BO60663 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LMX1BO60663 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.61■□□□□ 0.41
LMX1BO60663 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
LMX1BO60663 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1BO60663 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.6■□□□□ 0.41
LMX1BO60663 AC125437.2-201ENST00000625180 2167 ntBASIC17.6■□□□□ 0.41
LMX1BO60663 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1BO60663 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1BO60663 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.6■□□□□ 0.41
LMX1BO60663 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.6■□□□□ 0.41
LMX1BO60663 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.6■□□□□ 0.41
LMX1BO60663 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LMX1BO60663 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1BO60663 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
LMX1BO60663 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
LMX1BO60663 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1BO60663 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.6■□□□□ 0.41
LMX1BO60663 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1BO60663 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
LMX1BO60663 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1BO60663 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1BO60663 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LMX1BO60663 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1BO60663 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1BO60663 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LMX1BO60663 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.59■□□□□ 0.41
LMX1BO60663 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1BO60663 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1BO60663 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.59■□□□□ 0.41
LMX1BO60663 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1BO60663 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1BO60663 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1BO60663 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
LMX1BO60663 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1BO60663 POU5F1P3-201ENST00000428824 1078 ntBASIC17.59■□□□□ 0.41
LMX1BO60663 AC093827.2-201ENST00000512654 315 ntBASIC17.59■□□□□ 0.41
LMX1BO60663 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
LMX1BO60663 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.59■□□□□ 0.41
LMX1BO60663 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
LMX1BO60663 AC013268.1-206ENST00000638368 961 ntBASIC17.59■□□□□ 0.41
LMX1BO60663 AC112229.1-201ENST00000639295 961 ntBASIC17.59■□□□□ 0.41
LMX1BO60663 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1BO60663 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.59■□□□□ 0.41
LMX1BO60663 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LMX1BO60663 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LMX1BO60663 DPP3P2-201ENST00000416030 1696 ntBASIC17.58■□□□□ 0.41
LMX1BO60663 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.58■□□□□ 0.41
LMX1BO60663 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.58■□□□□ 0.41
LMX1BO60663 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.58■□□□□ 0.41
LMX1BO60663 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1BO60663 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1BO60663 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.58■□□□□ 0.4
LMX1BO60663 KRT18P29-201ENST00000397031 1267 ntBASIC17.58■□□□□ 0.4
LMX1BO60663 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms