Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AL162377.1-201ENST00000618844 1793 ntBASIC18.14■□□□□ 0.49
SSX4O60224 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SSX4O60224 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SSX4O60224 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SSX4O60224 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSX4O60224 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SSX4O60224 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSX4O60224 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SSX4O60224 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SSX4O60224 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.13■□□□□ 0.49
SSX4O60224 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 AC079089.2-201ENST00000531211 1277 ntBASIC18.13■□□□□ 0.49
SSX4O60224 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.13■□□□□ 0.49
SSX4O60224 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.13■□□□□ 0.49
SSX4O60224 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.13■□□□□ 0.49
SSX4O60224 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
SSX4O60224 AL121832.2-201ENST00000610979 668 ntBASIC18.13■□□□□ 0.49
SSX4O60224 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSX4O60224 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SSX4O60224 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SSX4O60224 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SSX4O60224 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.12■□□□□ 0.49
SSX4O60224 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
SSX4O60224 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.12■□□□□ 0.49
SSX4O60224 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX4O60224 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX4O60224 AC005082.1-201ENST00000413042 2259 ntBASIC18.12■□□□□ 0.49
SSX4O60224 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX4O60224 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX4O60224 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX4O60224 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSX4O60224 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSX4O60224 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX4O60224 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SSX4O60224 AP004607.7-201ENST00000527152 1677 ntBASIC18.12■□□□□ 0.49
SSX4O60224 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.12■□□□□ 0.49
SSX4O60224 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX4O60224 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.12■□□□□ 0.49
SSX4O60224 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSX4O60224 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SSX4O60224 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SSX4O60224 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.11■□□□□ 0.49
SSX4O60224 AC083906.2-201ENST00000511578 360 ntBASIC18.11■□□□□ 0.49
SSX4O60224 DUX4L16-201ENST00000555130 1264 ntBASIC18.11■□□□□ 0.49
SSX4O60224 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.11■□□□□ 0.49
SSX4O60224 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.11■□□□□ 0.49
SSX4O60224 AC005181.1-201ENST00000604782 1256 ntBASIC18.11■□□□□ 0.49
SSX4O60224 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.11■□□□□ 0.49
SSX4O60224 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SSX4O60224 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.11■□□□□ 0.49
SSX4O60224 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SSX4O60224 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SSX4O60224 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 AC138932.1-201ENST00000534164 6830 ntBASIC18.1■□□□□ 0.49
SSX4O60224 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.1■□□□□ 0.49
SSX4O60224 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
SSX4O60224 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.1■□□□□ 0.49
SSX4O60224 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.1■□□□□ 0.49
SSX4O60224 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.1■□□□□ 0.49
SSX4O60224 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.1■□□□□ 0.49
SSX4O60224 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SSX4O60224 MYCNOS-205ENST00000641950 531 ntBASIC18.1■□□□□ 0.49
SSX4O60224 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
SSX4O60224 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.1■□□□□ 0.49
SSX4O60224 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SSX4O60224 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX4O60224 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX4O60224 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX4O60224 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SSX4O60224 AC055733.4-201ENST00000638462 1354 ntBASIC18.09■□□□□ 0.49
SSX4O60224 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SSX4O60224 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms