Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
CLDN3O15551 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLDN3O15551 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CLDN3O15551 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CLDN3O15551 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.96■■□□□ 1.11
CLDN3O15551 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CLDN3O15551 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
CLDN3O15551 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.11
CLDN3O15551 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CLDN3O15551 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLDN3O15551 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLDN3O15551 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.95■■□□□ 1.1
CLDN3O15551 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.95■■□□□ 1.1
CLDN3O15551 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLDN3O15551 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLDN3O15551 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLDN3O15551 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
CLDN3O15551 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.95■■□□□ 1.1
CLDN3O15551 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.95■■□□□ 1.1
CLDN3O15551 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.95■■□□□ 1.1
CLDN3O15551 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.95■■□□□ 1.1
CLDN3O15551 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
CLDN3O15551 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CLDN3O15551 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLDN3O15551 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
CLDN3O15551 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.95■■□□□ 1.1
CLDN3O15551 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLDN3O15551 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLDN3O15551 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.94■■□□□ 1.1
CLDN3O15551 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.94■■□□□ 1.1
CLDN3O15551 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLDN3O15551 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.94■■□□□ 1.1
CLDN3O15551 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.94■■□□□ 1.1
CLDN3O15551 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLDN3O15551 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLDN3O15551 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
CLDN3O15551 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLDN3O15551 AC008403.3-201ENST00000598924 454 ntBASIC21.94■■□□□ 1.1
CLDN3O15551 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.94■■□□□ 1.1
CLDN3O15551 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLDN3O15551 AC006557.6-201ENST00000623071 864 ntBASIC21.94■■□□□ 1.1
CLDN3O15551 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.94■■□□□ 1.1
CLDN3O15551 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
CLDN3O15551 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CLDN3O15551 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CLDN3O15551 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.94■■□□□ 1.1
CLDN3O15551 AC073314.1-201ENST00000568729 2216 ntBASIC21.94■■□□□ 1.1
CLDN3O15551 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLDN3O15551 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CLDN3O15551 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.93■■□□□ 1.1
CLDN3O15551 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLDN3O15551 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CLDN3O15551 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLDN3O15551 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLDN3O15551 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
CLDN3O15551 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CLDN3O15551 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CLDN3O15551 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.93■■□□□ 1.1
CLDN3O15551 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.93■■□□□ 1.1
CLDN3O15551 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.93■■□□□ 1.1
CLDN3O15551 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.93■■□□□ 1.1
CLDN3O15551 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLDN3O15551 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.92■■□□□ 1.1
CLDN3O15551 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.92■■□□□ 1.1
CLDN3O15551 AC020907.5-201ENST00000624372 1936 ntBASIC21.92■■□□□ 1.1
CLDN3O15551 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.92■■□□□ 1.1
CLDN3O15551 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.92■■□□□ 1.1
CLDN3O15551 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.92■■□□□ 1.1
CLDN3O15551 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.92■■□□□ 1.1
CLDN3O15551 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLDN3O15551 HLA-G-202ENST00000376815 851 ntBASIC21.92■■□□□ 1.1
CLDN3O15551 HLA-G-203ENST00000376818 1127 ntBASIC21.92■■□□□ 1.1
CLDN3O15551 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.92■■□□□ 1.1
CLDN3O15551 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
CLDN3O15551 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CLDN3O15551 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.92■■□□□ 1.1
CLDN3O15551 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.92■■□□□ 1.1
CLDN3O15551 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLDN3O15551 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLDN3O15551 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLDN3O15551 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLDN3O15551 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLDN3O15551 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CLDN3O15551 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
CLDN3O15551 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.91■■□□□ 1.1
CLDN3O15551 KRT8P20-201ENST00000423953 1409 ntBASIC21.91■■□□□ 1.1
CLDN3O15551 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLDN3O15551 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
CLDN3O15551 FEM1AP1-201ENST00000431297 1995 ntBASIC21.91■■□□□ 1.1
CLDN3O15551 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CLDN3O15551 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLDN3O15551 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.91■■□□□ 1.1
CLDN3O15551 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.91■■□□□ 1.1
CLDN3O15551 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CLDN3O15551 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CLDN3O15551 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLDN3O15551 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLDN3O15551 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLDN3O15551 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.91■■□□□ 1.1
CLDN3O15551 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms