Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 AL121829.2-201ENST00000620908 328 ntBASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.61■■□□□ 1.05
SMIM28A0A1B0GU29 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 AC239809.2-201ENST00000415381 517 ntBASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMIM28A0A1B0GU29 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMIM28A0A1B0GU29 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 KRASP1-201ENST00000407852 552 ntBASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 AC110285.5-201ENST00000611501 352 ntBASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMIM28A0A1B0GU29 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMIM28A0A1B0GU29 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMIM28A0A1B0GU29 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SMIM28A0A1B0GU29 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
SMIM28A0A1B0GU29 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 PRKY-204ENST00000533551 1019 ntBASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMIM28A0A1B0GU29 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 AL596275.1-201ENST00000423464 877 ntBASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 Z99916.2-201ENST00000604037 246 ntBASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMIM28A0A1B0GU29 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms