Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 KRT17P2-201ENST00000300992 1314 ntBASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 RPS2P55-201ENST00000397318 883 ntBASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 AC107956.1-201ENST00000494359 873 ntBASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SSX2IPQ9Y2D8 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 PRKY-204ENST00000533551 1019 ntBASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SSX2IPQ9Y2D8 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SSX2IPQ9Y2D8 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SSX2IPQ9Y2D8 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 AC011484.1-201ENST00000377652 1995 ntBASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 AL121603.2-201ENST00000557373 2117 ntBASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SSX2IPQ9Y2D8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms