Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 AC068338.2-201ENST00000563278 1430 ntBASIC17.95■□□□□ 0.46
VSX1Q9NZR4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VSX1Q9NZR4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 BX119927.1-201ENST00000636596 1552 ntBASIC17.94■□□□□ 0.46
VSX1Q9NZR4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VSX1Q9NZR4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 MCRIP2P1-201ENST00000394346 511 ntBASIC17.93■□□□□ 0.46
VSX1Q9NZR4 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 AC011767.1-201ENST00000617410 1153 ntBASIC17.93■□□□□ 0.46
VSX1Q9NZR4 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VSX1Q9NZR4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VSX1Q9NZR4 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
VSX1Q9NZR4 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VSX1Q9NZR4 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VSX1Q9NZR4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VSX1Q9NZR4 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
VSX1Q9NZR4 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VSX1Q9NZR4 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VSX1Q9NZR4 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VSX1Q9NZR4 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC17.92■□□□□ 0.46
VSX1Q9NZR4 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms