Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.05■■□□□ 1.12
TRAIPQ9BWF2 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC22.05■■□□□ 1.12
TRAIPQ9BWF2 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC22.05■■□□□ 1.12
TRAIPQ9BWF2 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.05■■□□□ 1.12
TRAIPQ9BWF2 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
TRAIPQ9BWF2 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
TRAIPQ9BWF2 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRAIPQ9BWF2 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
TRAIPQ9BWF2 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
TRAIPQ9BWF2 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 AC006557.6-201ENST00000623071 864 ntBASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC22.03■■□□□ 1.12
TRAIPQ9BWF2 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 SERF2-207ENST00000409614 582 ntTSL 2 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC22.02■■□□□ 1.12
TRAIPQ9BWF2 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
TRAIPQ9BWF2 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC22.02■■□□□ 1.11
TRAIPQ9BWF2 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 THEM4-205ENST00000489410 643 ntTSL 2 BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 AC124016.1-201ENST00000609552 612 ntBASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRAIPQ9BWF2 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms