Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC107956.1-201ENST00000494359 873 ntBASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 AC007375.3-201ENST00000600936 2314 ntBASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.56■■□□□ 1.04
PAAF1Q9BRP4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.55■■□□□ 1.04
PAAF1Q9BRP4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 AC233702.5-201ENST00000584107 538 ntBASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.54■■□□□ 1.04
PAAF1Q9BRP4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 AC007225.1-201ENST00000566331 1836 ntBASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 TSPY7P-201ENST00000431358 1114 ntBASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.53■■□□□ 1.04
PAAF1Q9BRP4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 AC012618.2-201ENST00000428058 849 ntBASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 AL121829.2-201ENST00000620908 328 ntBASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
PAAF1Q9BRP4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.52■■□□□ 1.03
PAAF1Q9BRP4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.03
PAAF1Q9BRP4 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.52■■□□□ 1.03
PAAF1Q9BRP4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.52■■□□□ 1.03
PAAF1Q9BRP4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
PAAF1Q9BRP4 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PAAF1Q9BRP4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms