Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 PNMA6B-201ENST00000538162 1200 ntBASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 MIR4651-201ENST00000582622 73 ntBASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 AC092720.2-201ENST00000602388 1665 ntBASIC18.95■□□□□ 0.62
PTCHD1Q96NR3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.94■□□□□ 0.62
PTCHD1Q96NR3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 LINC01006-201ENST00000333319 2292 ntBASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 TSPY20P-201ENST00000450910 630 ntBASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 UNC93B5-201ENST00000530315 699 ntBASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 FEM1AP1-201ENST00000431297 1995 ntBASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD1Q96NR3 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.92■□□□□ 0.62
PTCHD1Q96NR3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD1Q96NR3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.92■□□□□ 0.62
PTCHD1Q96NR3 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD1Q96NR3 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD1Q96NR3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD1Q96NR3 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.92■□□□□ 0.62
PTCHD1Q96NR3 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms