Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RTF1Q92541 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
RTF1Q92541 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC26.31■■□□□ 1.8
RTF1Q92541 PTBP1P-201ENST00000554374 1601 ntBASIC26.31■■□□□ 1.8
RTF1Q92541 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RTF1Q92541 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
RTF1Q92541 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC26.31■■□□□ 1.8
RTF1Q92541 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RTF1Q92541 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RTF1Q92541 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RTF1Q92541 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RTF1Q92541 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
RTF1Q92541 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC26.3■■□□□ 1.8
RTF1Q92541 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC26.3■■□□□ 1.8
RTF1Q92541 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RTF1Q92541 AC008550.1-201ENST00000511500 884 ntBASIC26.3■■□□□ 1.8
RTF1Q92541 LY6E-205ENST00000519611 635 ntTSL 3 BASIC26.3■■□□□ 1.8
RTF1Q92541 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC26.3■■□□□ 1.8
RTF1Q92541 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC26.3■■□□□ 1.8
RTF1Q92541 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC26.3■■□□□ 1.8
RTF1Q92541 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RTF1Q92541 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC26.3■■□□□ 1.8
RTF1Q92541 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
RTF1Q92541 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
RTF1Q92541 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
RTF1Q92541 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC26.3■■□□□ 1.8
RTF1Q92541 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
RTF1Q92541 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RTF1Q92541 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RTF1Q92541 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
RTF1Q92541 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RTF1Q92541 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RTF1Q92541 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC26.29■■□□□ 1.8
RTF1Q92541 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC26.29■■□□□ 1.8
RTF1Q92541 AC239809.2-201ENST00000415381 517 ntBASIC26.29■■□□□ 1.8
RTF1Q92541 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC26.29■■□□□ 1.8
RTF1Q92541 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC26.29■■□□□ 1.8
RTF1Q92541 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC26.29■■□□□ 1.8
RTF1Q92541 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RTF1Q92541 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
RTF1Q92541 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
RTF1Q92541 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RTF1Q92541 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
RTF1Q92541 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
RTF1Q92541 BID-203ENST00000399765 1879 ntTSL 2 BASIC26.28■■□□□ 1.8
RTF1Q92541 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RTF1Q92541 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RTF1Q92541 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RTF1Q92541 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC26.28■■□□□ 1.8
RTF1Q92541 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
RTF1Q92541 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC26.28■■□□□ 1.8
RTF1Q92541 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RTF1Q92541 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
RTF1Q92541 AC124016.1-201ENST00000609552 612 ntBASIC26.28■■□□□ 1.8
RTF1Q92541 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
RTF1Q92541 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
RTF1Q92541 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RTF1Q92541 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RTF1Q92541 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
RTF1Q92541 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RTF1Q92541 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RTF1Q92541 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RTF1Q92541 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RTF1Q92541 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RTF1Q92541 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RTF1Q92541 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RTF1Q92541 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RTF1Q92541 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC26.27■■□□□ 1.8
RTF1Q92541 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC26.27■■□□□ 1.8
RTF1Q92541 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC26.27■■□□□ 1.8
RTF1Q92541 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC26.27■■□□□ 1.8
RTF1Q92541 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RTF1Q92541 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 KRT8P20-201ENST00000423953 1409 ntBASIC26.27■■□□□ 1.8
RTF1Q92541 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
RTF1Q92541 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC26.27■■□□□ 1.8
RTF1Q92541 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC26.27■■□□□ 1.8
RTF1Q92541 AC007375.3-201ENST00000600936 2314 ntBASIC26.27■■□□□ 1.8
RTF1Q92541 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC26.27■■□□□ 1.8
RTF1Q92541 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RTF1Q92541 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
RTF1Q92541 AC124283.5-201ENST00000624661 1809 ntBASIC26.26■■□□□ 1.79
RTF1Q92541 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
RTF1Q92541 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
RTF1Q92541 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
RTF1Q92541 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC26.26■■□□□ 1.79
RTF1Q92541 SERF2-207ENST00000409614 582 ntTSL 2 BASIC26.26■■□□□ 1.79
RTF1Q92541 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RTF1Q92541 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms