Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 RARRES2P10-201ENST00000564312 460 ntBASIC19.66■□□□□ 0.74
LMX1AQ8TE12 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1AQ8TE12 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1AQ8TE12 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.65■□□□□ 0.74
LMX1AQ8TE12 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.65■□□□□ 0.74
LMX1AQ8TE12 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1AQ8TE12 REXO1L12P-201ENST00000622156 912 ntBASIC19.65■□□□□ 0.74
LMX1AQ8TE12 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1AQ8TE12 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1AQ8TE12 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LMX1AQ8TE12 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.65■□□□□ 0.74
LMX1AQ8TE12 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1AQ8TE12 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1AQ8TE12 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
LMX1AQ8TE12 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.64■□□□□ 0.74
LMX1AQ8TE12 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
LMX1AQ8TE12 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 HLA-G-202ENST00000376815 851 ntBASIC19.64■□□□□ 0.73
LMX1AQ8TE12 HLA-G-203ENST00000376818 1127 ntBASIC19.64■□□□□ 0.73
LMX1AQ8TE12 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.64■□□□□ 0.73
LMX1AQ8TE12 AC113410.3-201ENST00000623366 203 ntBASIC19.64■□□□□ 0.73
LMX1AQ8TE12 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1AQ8TE12 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 ECEL1P3-201ENST00000427961 737 ntBASIC19.63■□□□□ 0.73
LMX1AQ8TE12 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 PLK5-205ENST00000642079 1969 ntBASIC19.63■□□□□ 0.73
LMX1AQ8TE12 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
LMX1AQ8TE12 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 AF106564.1-201ENST00000607058 2553 ntBASIC19.62■□□□□ 0.73
LMX1AQ8TE12 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 NBPF21P-201ENST00000425093 1451 ntBASIC19.62■□□□□ 0.73
LMX1AQ8TE12 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 MIR4785-201ENST00000585005 73 ntBASIC19.62■□□□□ 0.73
LMX1AQ8TE12 AL121906.2-201ENST00000621597 723 ntBASIC19.62■□□□□ 0.73
LMX1AQ8TE12 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1AQ8TE12 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms