Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NKX2-3Q8TAU0 LINC01006-201ENST00000333319 2292 ntBASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC23.91■■□□□ 1.42
NKX2-3Q8TAU0 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 AC008403.3-201ENST00000598924 454 ntBASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 Z99916.2-201ENST00000604037 246 ntBASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NKX2-3Q8TAU0 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NKX2-3Q8TAU0 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.42
NKX2-3Q8TAU0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC23.89■■□□□ 1.42
NKX2-3Q8TAU0 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC23.89■■□□□ 1.42
NKX2-3Q8TAU0 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
NKX2-3Q8TAU0 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 SERP1-205ENST00000487153 657 ntTSL 4 BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 AL512408.1-201ENST00000569378 2000 ntBASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NKX2-3Q8TAU0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 SMG8-203ENST00000578922 2178 ntBASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 KRT17P3-201ENST00000420566 1262 ntBASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 SLC29A4P2-201ENST00000504749 1089 ntBASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
NKX2-3Q8TAU0 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NKX2-3Q8TAU0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NKX2-3Q8TAU0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.87■■□□□ 1.41
NKX2-3Q8TAU0 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NKX2-3Q8TAU0 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.87■■□□□ 1.41
NKX2-3Q8TAU0 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC23.87■■□□□ 1.41
NKX2-3Q8TAU0 MFF-205ENST00000354503 1085 ntTSL 2 BASIC23.87■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms