Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.29■□□□□ 0.68
CLHC1Q8NHS4 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 TERF1P5-201ENST00000477545 1207 ntBASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CLHC1Q8NHS4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLHC1Q8NHS4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLHC1Q8NHS4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CLHC1Q8NHS4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLHC1Q8NHS4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLHC1Q8NHS4 AC125437.2-201ENST00000625180 2167 ntBASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 AL691432.2-201ENST00000607222 2038 ntBASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 AC137761.2-201ENST00000561729 223 ntBASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 AC145350.3-201ENST00000569033 163 ntBASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 AC016405.3-201ENST00000607710 860 ntBASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 MIR6821-201ENST00000617625 74 ntBASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLHC1Q8NHS4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 AL591742.1-201ENST00000604433 565 ntBASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLHC1Q8NHS4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms