Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 PTPA-214ENST00000423100 988 ntTSL 2 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 AC060766.5-201ENST00000590539 871 ntBASIC6.18□□□□□ -1.42
SYNE1Q8NF91 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 FBXW4P1-201ENST00000426721 2239 ntBASIC6.18□□□□□ -1.42
SYNE1Q8NF91 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 ISG20-202ENST00000379224 540 ntTSL 3 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 AC124283.5-201ENST00000624661 1809 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 MDFI-202ENST00000373050 809 ntTSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AL353708.3-201ENST00000610272 989 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AL117328.2-201ENST00000624617 1940 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AC239809.2-201ENST00000415381 517 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AC091799.1-201ENST00000422823 811 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms