Protein–RNA interactions for Protein: Q7Z5J4

RAI1, Retinoic acid-induced protein 1, humanhuman

Predicted RBP Predictions only

Length 1,906 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAI1Q7Z5J4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RAI1Q7Z5J4 AL121829.2-201ENST00000620908 328 ntBASIC17.26■□□□□ 0.35
RAI1Q7Z5J4 AL121906.2-201ENST00000621597 723 ntBASIC17.26■□□□□ 0.35
RAI1Q7Z5J4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RAI1Q7Z5J4 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RAI1Q7Z5J4 KRT17P2-201ENST00000300992 1314 ntBASIC17.26■□□□□ 0.35
RAI1Q7Z5J4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RAI1Q7Z5J4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.26■□□□□ 0.35
RAI1Q7Z5J4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RAI1Q7Z5J4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RAI1Q7Z5J4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 REXO1L12P-201ENST00000622156 912 ntBASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RAI1Q7Z5J4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 AP001412.1-201ENST00000608405 714 ntBASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
RAI1Q7Z5J4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 FAM210CP-201ENST00000445714 574 ntBASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 RCN1P1-201ENST00000400413 996 ntBASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 TSPY15P-201ENST00000457163 923 ntBASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
RAI1Q7Z5J4 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 AC124283.5-201ENST00000624661 1809 ntBASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 PTBP1P-201ENST00000554374 1601 ntBASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 MIR1224-201ENST00000408193 85 ntBASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 KRT16P5-201ENST00000455284 522 ntBASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RAI1Q7Z5J4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms