Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 KRT17P3-201ENST00000420566 1262 ntBASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 C1QBPP2-201ENST00000528754 825 ntBASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 RNF121-214ENST00000533380 870 ntTSL 3 BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
CCDC144BQ3MJ40 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
CCDC144BQ3MJ40 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC144BQ3MJ40 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC23.33■■□□□ 1.32
CCDC144BQ3MJ40 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC23.33■■□□□ 1.32
CCDC144BQ3MJ40 NXN-202ENST00000537628 1340 ntTSL 3 BASIC23.33■■□□□ 1.32
CCDC144BQ3MJ40 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 GABARAPL3-202ENST00000624044 1851 ntBASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 SLC29A4P2-201ENST00000504749 1089 ntBASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC144BQ3MJ40 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 HES2-205ENST00000487437 968 ntTSL 3 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 SOX15-203ENST00000570788 1093 ntBASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 AC233263.1-201ENST00000578059 224 ntBASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 FAM197Y4-202ENST00000622692 608 ntBASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC144BQ3MJ40 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 OR2A1-AS1-207ENST00000486094 819 ntBASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 REXO2-208ENST00000539754 791 ntTSL 2 BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 RN7SL471P-201ENST00000580476 299 ntBASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.3■■□□□ 1.32
CCDC144BQ3MJ40 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 ADM-207ENST00000530439 1839 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms