Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH1Q08174 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
PCDH1Q08174 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDH1Q08174 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH1Q08174 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH1Q08174 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH1Q08174 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH1Q08174 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
PCDH1Q08174 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH1Q08174 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDH1Q08174 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH1Q08174 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH1Q08174 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
PCDH1Q08174 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH1Q08174 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PCDH1Q08174 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
PCDH1Q08174 AL589743.5-201ENST00000616611 1050 ntBASIC19.41■□□□□ 0.7
PCDH1Q08174 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PCDH1Q08174 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDH1Q08174 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH1Q08174 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH1Q08174 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH1Q08174 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH1Q08174 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PCDH1Q08174 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH1Q08174 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDH1Q08174 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH1Q08174 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH1Q08174 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH1Q08174 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.4■□□□□ 0.7
PCDH1Q08174 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH1Q08174 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDH1Q08174 AC026185.1-201ENST00000445748 174 ntBASIC19.4■□□□□ 0.7
PCDH1Q08174 AC093787.1-201ENST00000450396 207 ntBASIC19.4■□□□□ 0.7
PCDH1Q08174 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDH1Q08174 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDH1Q08174 AL050303.2-201ENST00000619798 666 ntBASIC19.4■□□□□ 0.7
PCDH1Q08174 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
PCDH1Q08174 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.4■□□□□ 0.7
PCDH1Q08174 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
PCDH1Q08174 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH1Q08174 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
PCDH1Q08174 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDH1Q08174 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.7
PCDH1Q08174 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.39■□□□□ 0.7
PCDH1Q08174 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH1Q08174 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH1Q08174 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PCDH1Q08174 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH1Q08174 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH1Q08174 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH1Q08174 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.39■□□□□ 0.69
PCDH1Q08174 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.39■□□□□ 0.69
PCDH1Q08174 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH1Q08174 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.39■□□□□ 0.69
PCDH1Q08174 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.39■□□□□ 0.69
PCDH1Q08174 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH1Q08174 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.39■□□□□ 0.69
PCDH1Q08174 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH1Q08174 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDH1Q08174 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PCDH1Q08174 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH1Q08174 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PCDH1Q08174 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH1Q08174 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
PCDH1Q08174 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH1Q08174 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.38■□□□□ 0.69
PCDH1Q08174 AL355472.2-201ENST00000422958 438 ntBASIC19.38■□□□□ 0.69
PCDH1Q08174 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH1Q08174 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH1Q08174 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
PCDH1Q08174 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH1Q08174 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH1Q08174 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.38■□□□□ 0.69
PCDH1Q08174 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.38■□□□□ 0.69
PCDH1Q08174 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH1Q08174 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PCDH1Q08174 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDH1Q08174 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
PCDH1Q08174 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDH1Q08174 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
PCDH1Q08174 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
PCDH1Q08174 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
PCDH1Q08174 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
PCDH1Q08174 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDH1Q08174 C2orf69P4-201ENST00000565394 541 ntBASIC19.37■□□□□ 0.69
PCDH1Q08174 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
PCDH1Q08174 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
PCDH1Q08174 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDH1Q08174 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms