Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 COX11P1-201ENST00000489116 835 ntBASIC12.6□□□□□ -0.39
HSPG2P98160 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC12.6□□□□□ -0.39
HSPG2P98160 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC12.6□□□□□ -0.39
HSPG2P98160 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
HSPG2P98160 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC12.6□□□□□ -0.39
HSPG2P98160 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
HSPG2P98160 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 KRT8P45-201ENST00000414328 1447 ntBASIC12.6□□□□□ -0.39
HSPG2P98160 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 CR769767.2-201ENST00000622735 460 ntBASIC12.6□□□□□ -0.39
HSPG2P98160 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
HSPG2P98160 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC12.6□□□□□ -0.39
HSPG2P98160 KRT18P38-201ENST00000449496 1282 ntBASIC12.6□□□□□ -0.39
HSPG2P98160 CALM1-205ENST00000553542 877 ntTSL 5 BASIC12.6□□□□□ -0.39
HSPG2P98160 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC12.6□□□□□ -0.39
HSPG2P98160 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC12.6□□□□□ -0.39
HSPG2P98160 FSCN1P1-201ENST00000568912 1481 ntBASIC12.6□□□□□ -0.39
HSPG2P98160 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
HSPG2P98160 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC12.6□□□□□ -0.39
HSPG2P98160 AC009078.2-202ENST00000463353 338 ntBASIC12.6□□□□□ -0.39
HSPG2P98160 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC12.6□□□□□ -0.39
HSPG2P98160 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC12.6□□□□□ -0.39
HSPG2P98160 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
HSPG2P98160 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HSPG2P98160 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HSPG2P98160 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HSPG2P98160 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
HSPG2P98160 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HSPG2P98160 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC12.59□□□□□ -0.39
HSPG2P98160 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC12.59□□□□□ -0.39
HSPG2P98160 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HSPG2P98160 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC12.59□□□□□ -0.39
HSPG2P98160 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HSPG2P98160 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HSPG2P98160 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC12.59□□□□□ -0.39
HSPG2P98160 AC092647.4-201ENST00000457211 535 ntBASIC12.59□□□□□ -0.39
HSPG2P98160 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC12.59□□□□□ -0.39
HSPG2P98160 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC12.59□□□□□ -0.39
HSPG2P98160 HYMAI.1-201ENST00000620949 238 ntBASIC12.59□□□□□ -0.39
HSPG2P98160 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HSPG2P98160 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HSPG2P98160 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HSPG2P98160 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC12.59□□□□□ -0.39
HSPG2P98160 AP002982.1-201ENST00000492365 877 ntBASIC12.59□□□□□ -0.39
HSPG2P98160 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC12.59□□□□□ -0.39
HSPG2P98160 KLK8-205ENST00000593490 267 ntTSL 3 BASIC12.59□□□□□ -0.39
HSPG2P98160 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HSPG2P98160 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC12.58□□□□□ -0.39
HSPG2P98160 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC12.58□□□□□ -0.4
HSPG2P98160 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC12.58□□□□□ -0.4
HSPG2P98160 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 HMGA1P5-201ENST00000412453 271 ntBASIC12.58□□□□□ -0.4
HSPG2P98160 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC12.58□□□□□ -0.4
HSPG2P98160 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC12.58□□□□□ -0.4
HSPG2P98160 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC12.58□□□□□ -0.4
HSPG2P98160 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
HSPG2P98160 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
HSPG2P98160 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
HSPG2P98160 UNC93B7-201ENST00000509439 705 ntBASIC12.58□□□□□ -0.4
HSPG2P98160 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC12.58□□□□□ -0.4
HSPG2P98160 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC12.58□□□□□ -0.4
HSPG2P98160 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC12.58□□□□□ -0.4
HSPG2P98160 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
HSPG2P98160 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC12.58□□□□□ -0.4
HSPG2P98160 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HSPG2P98160 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HSPG2P98160 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC12.57□□□□□ -0.4
HSPG2P98160 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC12.57□□□□□ -0.4
HSPG2P98160 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC12.57□□□□□ -0.4
HSPG2P98160 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC12.57□□□□□ -0.4
HSPG2P98160 GRAMD4P8-201ENST00000605465 1115 ntBASIC12.57□□□□□ -0.4
HSPG2P98160 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
HSPG2P98160 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
HSPG2P98160 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC12.57□□□□□ -0.4
HSPG2P98160 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HSPG2P98160 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC12.57□□□□□ -0.4
HSPG2P98160 FXN-203ENST00000396366 922 ntTSL 2 BASIC12.57□□□□□ -0.4
HSPG2P98160 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC12.57□□□□□ -0.4
HSPG2P98160 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HSPG2P98160 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HSPG2P98160 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
HSPG2P98160 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms