Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.18■□□□□ 0.18
CX3CL1P78423 PGM5P4-201ENST00000421970 445 ntBASIC16.18■□□□□ 0.18
CX3CL1P78423 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
CX3CL1P78423 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.18■□□□□ 0.18
CX3CL1P78423 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CL1P78423 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CL1P78423 AC100791.3-201ENST00000617619 330 ntBASIC16.18■□□□□ 0.18
CX3CL1P78423 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CL1P78423 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.18■□□□□ 0.18
CX3CL1P78423 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CX3CL1P78423 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CL1P78423 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.18■□□□□ 0.18
CX3CL1P78423 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC16.18■□□□□ 0.18
CX3CL1P78423 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CX3CL1P78423 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CL1P78423 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CX3CL1P78423 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CX3CL1P78423 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CX3CL1P78423 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.17■□□□□ 0.18
CX3CL1P78423 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CX3CL1P78423 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CX3CL1P78423 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CX3CL1P78423 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.17■□□□□ 0.18
CX3CL1P78423 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CX3CL1P78423 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CX3CL1P78423 MCRIP2P1-201ENST00000394346 511 ntBASIC16.17■□□□□ 0.18
CX3CL1P78423 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CX3CL1P78423 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CX3CL1P78423 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CX3CL1P78423 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CX3CL1P78423 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.17■□□□□ 0.18
CX3CL1P78423 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CX3CL1P78423 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.16■□□□□ 0.18
CX3CL1P78423 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CX3CL1P78423 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
CX3CL1P78423 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC16.16■□□□□ 0.18
CX3CL1P78423 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC16.16■□□□□ 0.18
CX3CL1P78423 CROCCP5-201ENST00000436658 830 ntBASIC16.16■□□□□ 0.18
CX3CL1P78423 AC133552.2-202ENST00000575694 574 ntBASIC16.16■□□□□ 0.18
CX3CL1P78423 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC16.16■□□□□ 0.18
CX3CL1P78423 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
CX3CL1P78423 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.16■□□□□ 0.18
CX3CL1P78423 AC073314.1-201ENST00000568729 2216 ntBASIC16.16■□□□□ 0.18
CX3CL1P78423 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.16■□□□□ 0.18
CX3CL1P78423 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.16■□□□□ 0.18
CX3CL1P78423 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CX3CL1P78423 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.16■□□□□ 0.18
CX3CL1P78423 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
CX3CL1P78423 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CX3CL1P78423 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CX3CL1P78423 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CX3CL1P78423 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.15■□□□□ 0.18
CX3CL1P78423 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.15■□□□□ 0.18
CX3CL1P78423 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC16.15■□□□□ 0.18
CX3CL1P78423 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.15■□□□□ 0.18
CX3CL1P78423 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 MIR663A-201ENST00000385250 93 ntBASIC16.15■□□□□ 0.18
CX3CL1P78423 AL512625.2-201ENST00000417533 625 ntBASIC16.15■□□□□ 0.18
CX3CL1P78423 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC16.15■□□□□ 0.18
CX3CL1P78423 AC006970.2-201ENST00000450065 779 ntBASIC16.15■□□□□ 0.18
CX3CL1P78423 KRT8P36-201ENST00000489121 1440 ntBASIC16.15■□□□□ 0.18
CX3CL1P78423 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.15■□□□□ 0.18
CX3CL1P78423 AC087633.2-202ENST00000565166 1439 ntBASIC16.15■□□□□ 0.18
CX3CL1P78423 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.15■□□□□ 0.18
CX3CL1P78423 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.15■□□□□ 0.18
CX3CL1P78423 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CX3CL1P78423 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
CX3CL1P78423 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC16.15■□□□□ 0.18
CX3CL1P78423 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
CX3CL1P78423 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CL1P78423 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms