Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.63■□□□□ 0.57
RNF4P78317 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF4P78317 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.63■□□□□ 0.57
RNF4P78317 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF4P78317 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF4P78317 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RNF4P78317 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
RNF4P78317 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.63■□□□□ 0.57
RNF4P78317 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.63■□□□□ 0.57
RNF4P78317 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.63■□□□□ 0.57
RNF4P78317 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.63■□□□□ 0.57
RNF4P78317 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF4P78317 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
RNF4P78317 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RNF4P78317 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
RNF4P78317 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF4P78317 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF4P78317 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNF4P78317 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.63■□□□□ 0.57
RNF4P78317 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
RNF4P78317 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.63■□□□□ 0.57
RNF4P78317 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.62■□□□□ 0.57
RNF4P78317 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.62■□□□□ 0.57
RNF4P78317 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
RNF4P78317 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.62■□□□□ 0.57
RNF4P78317 AC008403.3-201ENST00000598924 454 ntBASIC18.62■□□□□ 0.57
RNF4P78317 AC006557.6-201ENST00000623071 864 ntBASIC18.62■□□□□ 0.57
RNF4P78317 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
RNF4P78317 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
RNF4P78317 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF4P78317 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RNF4P78317 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RNF4P78317 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RNF4P78317 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RNF4P78317 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RNF4P78317 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.61■□□□□ 0.57
RNF4P78317 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.61■□□□□ 0.57
RNF4P78317 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.61■□□□□ 0.57
RNF4P78317 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.61■□□□□ 0.57
RNF4P78317 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.61■□□□□ 0.57
RNF4P78317 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.61■□□□□ 0.57
RNF4P78317 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
RNF4P78317 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.61■□□□□ 0.57
RNF4P78317 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RNF4P78317 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RNF4P78317 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RNF4P78317 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF4P78317 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF4P78317 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.6■□□□□ 0.57
RNF4P78317 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF4P78317 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF4P78317 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
RNF4P78317 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF4P78317 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF4P78317 HLA-G-202ENST00000376815 851 ntBASIC18.6■□□□□ 0.57
RNF4P78317 HLA-G-203ENST00000376818 1127 ntBASIC18.6■□□□□ 0.57
RNF4P78317 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.6■□□□□ 0.57
RNF4P78317 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
RNF4P78317 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.6■□□□□ 0.57
RNF4P78317 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RNF4P78317 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.6■□□□□ 0.57
RNF4P78317 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.6■□□□□ 0.57
RNF4P78317 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF4P78317 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF4P78317 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.6■□□□□ 0.57
RNF4P78317 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF4P78317 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.6■□□□□ 0.57
RNF4P78317 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
RNF4P78317 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.59■□□□□ 0.57
RNF4P78317 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.59■□□□□ 0.57
RNF4P78317 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
RNF4P78317 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNF4P78317 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNF4P78317 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNF4P78317 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.59■□□□□ 0.57
RNF4P78317 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.59■□□□□ 0.57
RNF4P78317 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RNF4P78317 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.59■□□□□ 0.57
RNF4P78317 AC008687.6-201ENST00000596318 630 ntBASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms