Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.27■□□□□ 0.36
UBA52P62987 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC17.27■□□□□ 0.36
UBA52P62987 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBA52P62987 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC17.27■□□□□ 0.36
UBA52P62987 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UBA52P62987 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBA52P62987 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
UBA52P62987 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UBA52P62987 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBA52P62987 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
UBA52P62987 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UBA52P62987 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.27■□□□□ 0.36
UBA52P62987 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.27■□□□□ 0.36
UBA52P62987 DUX4L16-201ENST00000555130 1264 ntBASIC17.27■□□□□ 0.36
UBA52P62987 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.27■□□□□ 0.36
UBA52P62987 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
UBA52P62987 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.27■□□□□ 0.35
UBA52P62987 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.27■□□□□ 0.35
UBA52P62987 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UBA52P62987 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
UBA52P62987 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
UBA52P62987 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.26■□□□□ 0.35
UBA52P62987 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
UBA52P62987 SLC29A4P1-201ENST00000398760 971 ntBASIC17.26■□□□□ 0.35
UBA52P62987 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.26■□□□□ 0.35
UBA52P62987 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.26■□□□□ 0.35
UBA52P62987 TSPY20P-201ENST00000450910 630 ntBASIC17.26■□□□□ 0.35
UBA52P62987 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.26■□□□□ 0.35
UBA52P62987 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
UBA52P62987 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
UBA52P62987 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
UBA52P62987 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.26■□□□□ 0.35
UBA52P62987 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UBA52P62987 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
UBA52P62987 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.25■□□□□ 0.35
UBA52P62987 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UBA52P62987 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.25■□□□□ 0.35
UBA52P62987 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UBA52P62987 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.25■□□□□ 0.35
UBA52P62987 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.25■□□□□ 0.35
UBA52P62987 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.25■□□□□ 0.35
UBA52P62987 SLC7A5P2-201ENST00000553010 536 ntBASIC17.25■□□□□ 0.35
UBA52P62987 KRT18P6-201ENST00000555540 1265 ntBASIC17.25■□□□□ 0.35
UBA52P62987 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.25■□□□□ 0.35
UBA52P62987 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.25■□□□□ 0.35
UBA52P62987 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.25■□□□□ 0.35
UBA52P62987 MYCNOS-205ENST00000641950 531 ntBASIC17.25■□□□□ 0.35
UBA52P62987 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
UBA52P62987 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.25■□□□□ 0.35
UBA52P62987 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UBA52P62987 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
UBA52P62987 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
UBA52P62987 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UBA52P62987 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
UBA52P62987 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
UBA52P62987 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
UBA52P62987 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
UBA52P62987 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.24■□□□□ 0.35
UBA52P62987 GUSBP6-202ENST00000438529 1198 ntBASIC17.24■□□□□ 0.35
UBA52P62987 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.24■□□□□ 0.35
UBA52P62987 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.24■□□□□ 0.35
UBA52P62987 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
UBA52P62987 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
UBA52P62987 AP001160.3-201ENST00000601484 763 ntBASIC17.24■□□□□ 0.35
UBA52P62987 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.24■□□□□ 0.35
UBA52P62987 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.24■□□□□ 0.35
UBA52P62987 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.24■□□□□ 0.35
UBA52P62987 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
UBA52P62987 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
UBA52P62987 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC17.24■□□□□ 0.35
UBA52P62987 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
UBA52P62987 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms