Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC097381.1-201ENST00000429019 1296 ntBASIC19.69■□□□□ 0.74
PKNOX1P55347 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PKNOX1P55347 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PKNOX1P55347 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.69■□□□□ 0.74
PKNOX1P55347 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PKNOX1P55347 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PKNOX1P55347 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PKNOX1P55347 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
PKNOX1P55347 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.69■□□□□ 0.74
PKNOX1P55347 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
PKNOX1P55347 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.68■□□□□ 0.74
PKNOX1P55347 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.68■□□□□ 0.74
PKNOX1P55347 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.68■□□□□ 0.74
PKNOX1P55347 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
PKNOX1P55347 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.68■□□□□ 0.74
PKNOX1P55347 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.68■□□□□ 0.74
PKNOX1P55347 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
PKNOX1P55347 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
PKNOX1P55347 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
PKNOX1P55347 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.68■□□□□ 0.74
PKNOX1P55347 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.68■□□□□ 0.74
PKNOX1P55347 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.68■□□□□ 0.74
PKNOX1P55347 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PKNOX1P55347 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.68■□□□□ 0.74
PKNOX1P55347 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PKNOX1P55347 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
PKNOX1P55347 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.67■□□□□ 0.74
PKNOX1P55347 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PKNOX1P55347 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PKNOX1P55347 AC098818.2-201ENST00000564925 2320 ntBASIC19.67■□□□□ 0.74
PKNOX1P55347 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
PKNOX1P55347 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.67■□□□□ 0.74
PKNOX1P55347 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PKNOX1P55347 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PKNOX1P55347 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.67■□□□□ 0.74
PKNOX1P55347 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PKNOX1P55347 KRT18P61-201ENST00000585825 1298 ntBASIC19.67■□□□□ 0.74
PKNOX1P55347 UBE2DNL-204ENST00000602536 740 ntBASIC19.67■□□□□ 0.74
PKNOX1P55347 MYCNOS-205ENST00000641950 531 ntBASIC19.67■□□□□ 0.74
PKNOX1P55347 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PKNOX1P55347 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PKNOX1P55347 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
PKNOX1P55347 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
PKNOX1P55347 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.67■□□□□ 0.74
PKNOX1P55347 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
PKNOX1P55347 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PKNOX1P55347 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
PKNOX1P55347 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.66■□□□□ 0.74
PKNOX1P55347 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.66■□□□□ 0.74
PKNOX1P55347 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PKNOX1P55347 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PKNOX1P55347 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PKNOX1P55347 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.66■□□□□ 0.74
PKNOX1P55347 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PKNOX1P55347 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PKNOX1P55347 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PKNOX1P55347 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PKNOX1P55347 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
PKNOX1P55347 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
PKNOX1P55347 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PKNOX1P55347 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PKNOX1P55347 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PKNOX1P55347 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.65■□□□□ 0.74
PKNOX1P55347 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.65■□□□□ 0.74
PKNOX1P55347 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
PKNOX1P55347 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PKNOX1P55347 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
PKNOX1P55347 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.65■□□□□ 0.74
PKNOX1P55347 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.65■□□□□ 0.74
PKNOX1P55347 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.65■□□□□ 0.74
PKNOX1P55347 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PKNOX1P55347 AC018445.3-201ENST00000624177 1945 ntBASIC19.65■□□□□ 0.74
PKNOX1P55347 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PKNOX1P55347 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
PKNOX1P55347 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PKNOX1P55347 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PKNOX1P55347 PGM5P4-201ENST00000421970 445 ntBASIC19.65■□□□□ 0.74
PKNOX1P55347 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.65■□□□□ 0.74
PKNOX1P55347 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.65■□□□□ 0.74
PKNOX1P55347 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.65■□□□□ 0.74
PKNOX1P55347 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PKNOX1P55347 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.65■□□□□ 0.74
PKNOX1P55347 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PKNOX1P55347 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.65■□□□□ 0.74
PKNOX1P55347 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
PKNOX1P55347 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.64■□□□□ 0.74
PKNOX1P55347 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
PKNOX1P55347 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
PKNOX1P55347 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
PKNOX1P55347 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms