Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HLA-DMBP28068 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
HLA-DMBP28068 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 DLX3-202ENST00000512495 834 ntTSL 2 BASIC15.3■□□□□ 0.04
HLA-DMBP28068 AC090192.1-201ENST00000517740 490 ntBASIC15.3■□□□□ 0.04
HLA-DMBP28068 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC15.3■□□□□ 0.04
HLA-DMBP28068 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC15.3■□□□□ 0.04
HLA-DMBP28068 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC15.3■□□□□ 0.04
HLA-DMBP28068 AC243732.1-201ENST00000612648 864 ntBASIC15.3■□□□□ 0.04
HLA-DMBP28068 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC15.3■□□□□ 0.04
HLA-DMBP28068 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
HLA-DMBP28068 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 ME3-201ENST00000323418 1068 ntTSL 5 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 DBI-210ENST00000542275 757 ntTSL 5 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 LBX2-AS1-202ENST00000603175 2083 ntBASIC15.29■□□□□ 0.04
HLA-DMBP28068 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HLA-DMBP28068 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC15.29■□□□□ 0.04
HLA-DMBP28068 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 AC125437.2-201ENST00000625180 2167 ntBASIC15.28■□□□□ 0.04
HLA-DMBP28068 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 STX7-201ENST00000367937 1090 ntTSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.28■□□□□ 0.04
HLA-DMBP28068 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HLA-DMBP28068 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DMBP28068 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 AL158211.5-201ENST00000623583 2518 ntBASIC15.27■□□□□ 0.04
HLA-DMBP28068 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DMBP28068 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DMBP28068 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DMBP28068 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DMBP28068 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DMBP28068 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DMBP28068 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DMBP28068 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HLA-DMBP28068 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC15.27■□□□□ 0.04
HLA-DMBP28068 SLC7A5P1-201ENST00000568957 537 ntBASIC15.27■□□□□ 0.04
HLA-DMBP28068 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HLA-DMBP28068 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms