Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 DUX4L16-201ENST00000555130 1264 ntBASIC19.18■□□□□ 0.66
SDC1P18827 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.18■□□□□ 0.66
SDC1P18827 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.18■□□□□ 0.66
SDC1P18827 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.18■□□□□ 0.66
SDC1P18827 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SDC1P18827 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.18■□□□□ 0.66
SDC1P18827 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.18■□□□□ 0.66
SDC1P18827 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC1P18827 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
SDC1P18827 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC1P18827 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC1P18827 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC1P18827 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.17■□□□□ 0.66
SDC1P18827 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC1P18827 AC016769.1-201ENST00000409132 1010 ntBASIC19.17■□□□□ 0.66
SDC1P18827 RARRES2P4-201ENST00000514074 484 ntBASIC19.17■□□□□ 0.66
SDC1P18827 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC1P18827 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.17■□□□□ 0.66
SDC1P18827 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SDC1P18827 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC1P18827 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC1P18827 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SDC1P18827 AC068338.2-201ENST00000563278 1430 ntBASIC19.17■□□□□ 0.66
SDC1P18827 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC1P18827 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC1P18827 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC1P18827 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC1P18827 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC1P18827 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.16■□□□□ 0.66
SDC1P18827 AC006015.1-201ENST00000429970 570 ntBASIC19.16■□□□□ 0.66
SDC1P18827 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SDC1P18827 RARRES2P6-201ENST00000567333 442 ntBASIC19.16■□□□□ 0.66
SDC1P18827 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.16■□□□□ 0.66
SDC1P18827 AC011767.1-201ENST00000617410 1153 ntBASIC19.16■□□□□ 0.66
SDC1P18827 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SDC1P18827 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.16■□□□□ 0.66
SDC1P18827 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.16■□□□□ 0.66
SDC1P18827 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC1P18827 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC1P18827 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SDC1P18827 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.16■□□□□ 0.66
SDC1P18827 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC1P18827 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDC1P18827 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
SDC1P18827 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDC1P18827 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.15■□□□□ 0.66
SDC1P18827 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.15■□□□□ 0.66
SDC1P18827 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SDC1P18827 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC1P18827 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC1P18827 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.15■□□□□ 0.66
SDC1P18827 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SDC1P18827 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.15■□□□□ 0.66
SDC1P18827 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC1P18827 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SDC1P18827 AL158211.5-201ENST00000623583 2518 ntBASIC19.15■□□□□ 0.66
SDC1P18827 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC1P18827 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.15■□□□□ 0.66
SDC1P18827 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SDC1P18827 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC1P18827 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC1P18827 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDC1P18827 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SDC1P18827 PTBP1P-201ENST00000554374 1601 ntBASIC19.14■□□□□ 0.66
SDC1P18827 TMEM179-206ENST00000616017 1645 ntBASIC19.14■□□□□ 0.66
SDC1P18827 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SDC1P18827 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SDC1P18827 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SDC1P18827 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.14■□□□□ 0.65
SDC1P18827 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDC1P18827 MCRIP2P1-201ENST00000394346 511 ntBASIC19.14■□□□□ 0.65
SDC1P18827 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDC1P18827 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.14■□□□□ 0.65
SDC1P18827 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.14■□□□□ 0.65
SDC1P18827 AC100791.3-201ENST00000617619 330 ntBASIC19.14■□□□□ 0.65
SDC1P18827 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SDC1P18827 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.14■□□□□ 0.65
SDC1P18827 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SDC1P18827 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDC1P18827 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDC1P18827 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.14■□□□□ 0.65
SDC1P18827 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDC1P18827 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDC1P18827 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDC1P18827 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC1P18827 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.13■□□□□ 0.65
SDC1P18827 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC1P18827 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.13■□□□□ 0.65
SDC1P18827 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC1P18827 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC1P18827 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDC1P18827 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.13■□□□□ 0.65
SDC1P18827 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.13■□□□□ 0.65
SDC1P18827 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms