Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC010542.4-201ENST00000563151 1910 ntBASIC20.96■□□□□ 0.95
VCANP13611 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VCANP13611 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.96■□□□□ 0.95
VCANP13611 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.96■□□□□ 0.95
VCANP13611 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCANP13611 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
VCANP13611 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.96■□□□□ 0.95
VCANP13611 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCANP13611 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.96■□□□□ 0.95
VCANP13611 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
VCANP13611 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
VCANP13611 AC142381.3-201ENST00000568208 1670 ntBASIC20.95■□□□□ 0.95
VCANP13611 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
VCANP13611 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.95■□□□□ 0.94
VCANP13611 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.95■□□□□ 0.94
VCANP13611 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.95■□□□□ 0.94
VCANP13611 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.95■□□□□ 0.94
VCANP13611 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
VCANP13611 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.95■□□□□ 0.94
VCANP13611 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
VCANP13611 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.95■□□□□ 0.94
VCANP13611 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.95■□□□□ 0.94
VCANP13611 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.95■□□□□ 0.94
VCANP13611 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCANP13611 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
VCANP13611 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.94■□□□□ 0.94
VCANP13611 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.94■□□□□ 0.94
VCANP13611 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.94■□□□□ 0.94
VCANP13611 C2orf69P3-201ENST00000565542 1120 ntBASIC20.94■□□□□ 0.94
VCANP13611 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.94■□□□□ 0.94
VCANP13611 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.94■□□□□ 0.94
VCANP13611 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.94■□□□□ 0.94
VCANP13611 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VCANP13611 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
VCANP13611 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCANP13611 AC087742.1-201ENST00000575880 1738 ntBASIC20.93■□□□□ 0.94
VCANP13611 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCANP13611 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.93■□□□□ 0.94
VCANP13611 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCANP13611 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.93■□□□□ 0.94
VCANP13611 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCANP13611 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.93■□□□□ 0.94
VCANP13611 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.93■□□□□ 0.94
VCANP13611 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.93■□□□□ 0.94
VCANP13611 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCANP13611 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCANP13611 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.93■□□□□ 0.94
VCANP13611 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCANP13611 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VCANP13611 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCANP13611 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.93■□□□□ 0.94
VCANP13611 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.92■□□□□ 0.94
VCANP13611 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
VCANP13611 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.92■□□□□ 0.94
VCANP13611 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VCANP13611 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.92■□□□□ 0.94
VCANP13611 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.92■□□□□ 0.94
VCANP13611 AL355385.1-201ENST00000606123 409 ntBASIC20.92■□□□□ 0.94
VCANP13611 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.92■□□□□ 0.94
VCANP13611 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCANP13611 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCANP13611 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCANP13611 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.92■□□□□ 0.94
VCANP13611 COX11P1-201ENST00000489116 835 ntBASIC20.92■□□□□ 0.94
VCANP13611 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.92■□□□□ 0.94
VCANP13611 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VCANP13611 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.92■□□□□ 0.94
VCANP13611 CR392000.1-201ENST00000624770 1228 ntBASIC20.92■□□□□ 0.94
VCANP13611 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCANP13611 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VCANP13611 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCANP13611 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCANP13611 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms