Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIMS3P0CW19 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIMS3P0CW19 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIMS3P0CW19 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIMS3P0CW19 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIMS3P0CW19 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIMS3P0CW19 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIMS3P0CW19 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIMS3P0CW19 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
LIMS3P0CW19 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIMS3P0CW19 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIMS3P0CW19 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.86■□□□□ 0.45
LIMS3P0CW19 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 AC093503.3-201ENST00000624917 2352 ntBASIC17.86■□□□□ 0.45
LIMS3P0CW19 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.86■□□□□ 0.45
LIMS3P0CW19 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.86■□□□□ 0.45
LIMS3P0CW19 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 SLC7A5P2-201ENST00000553010 536 ntBASIC17.86■□□□□ 0.45
LIMS3P0CW19 AL354811.1-201ENST00000610286 706 ntBASIC17.86■□□□□ 0.45
LIMS3P0CW19 AL355001.2-201ENST00000620617 1191 ntBASIC17.86■□□□□ 0.45
LIMS3P0CW19 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
LIMS3P0CW19 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.86■□□□□ 0.45
LIMS3P0CW19 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
LIMS3P0CW19 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.86■□□□□ 0.45
LIMS3P0CW19 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.86■□□□□ 0.45
LIMS3P0CW19 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
LIMS3P0CW19 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LIMS3P0CW19 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 EDA-201ENST00000338901 1233 ntBASIC17.85■□□□□ 0.45
LIMS3P0CW19 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMS3P0CW19 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIMS3P0CW19 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIMS3P0CW19 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 MIR939-201ENST00000401314 82 ntBASIC17.85■□□□□ 0.45
LIMS3P0CW19 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIMS3P0CW19 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIMS3P0CW19 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 PBX2P1-201ENST00000493219 1291 ntBASIC17.85■□□□□ 0.45
LIMS3P0CW19 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMS3P0CW19 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMS3P0CW19 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMS3P0CW19 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMS3P0CW19 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMS3P0CW19 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMS3P0CW19 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.84■□□□□ 0.45
LIMS3P0CW19 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 AC091799.1-201ENST00000422823 811 ntBASIC17.84■□□□□ 0.45
LIMS3P0CW19 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMS3P0CW19 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMS3P0CW19 AC106739.1-201ENST00000617035 715 ntBASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms