Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SEMA3DO95025 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.26■□□□□ 0.67
SEMA3DO95025 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.26■□□□□ 0.67
SEMA3DO95025 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
SEMA3DO95025 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
SEMA3DO95025 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.26■□□□□ 0.67
SEMA3DO95025 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
SEMA3DO95025 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SEMA3DO95025 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.26■□□□□ 0.67
SEMA3DO95025 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.25■□□□□ 0.67
SEMA3DO95025 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SEMA3DO95025 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.25■□□□□ 0.67
SEMA3DO95025 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SEMA3DO95025 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.25■□□□□ 0.67
SEMA3DO95025 SMG8-203ENST00000578922 2178 ntBASIC19.25■□□□□ 0.67
SEMA3DO95025 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.25■□□□□ 0.67
SEMA3DO95025 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.25■□□□□ 0.67
SEMA3DO95025 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 AC026185.1-201ENST00000445748 174 ntBASIC19.25■□□□□ 0.67
SEMA3DO95025 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.25■□□□□ 0.67
SEMA3DO95025 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SEMA3DO95025 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 RAP2CP1-201ENST00000605103 478 ntBASIC19.25■□□□□ 0.67
SEMA3DO95025 AL589743.5-201ENST00000616611 1050 ntBASIC19.25■□□□□ 0.67
SEMA3DO95025 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SEMA3DO95025 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.25■□□□□ 0.67
SEMA3DO95025 AC099778.1-201ENST00000568593 1911 ntBASIC19.25■□□□□ 0.67
SEMA3DO95025 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.25■□□□□ 0.67
SEMA3DO95025 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.25■□□□□ 0.67
SEMA3DO95025 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SEMA3DO95025 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SEMA3DO95025 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.24■□□□□ 0.67
SEMA3DO95025 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.24■□□□□ 0.67
SEMA3DO95025 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEMA3DO95025 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SEMA3DO95025 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SEMA3DO95025 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.24■□□□□ 0.67
SEMA3DO95025 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SEMA3DO95025 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.24■□□□□ 0.67
SEMA3DO95025 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEMA3DO95025 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SEMA3DO95025 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.24■□□□□ 0.67
SEMA3DO95025 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEMA3DO95025 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.24■□□□□ 0.67
SEMA3DO95025 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SEMA3DO95025 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.24■□□□□ 0.67
SEMA3DO95025 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.24■□□□□ 0.67
SEMA3DO95025 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
SEMA3DO95025 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SEMA3DO95025 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.24■□□□□ 0.67
SEMA3DO95025 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SEMA3DO95025 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.24■□□□□ 0.67
SEMA3DO95025 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEMA3DO95025 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEMA3DO95025 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.23■□□□□ 0.67
SEMA3DO95025 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEMA3DO95025 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
SEMA3DO95025 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEMA3DO95025 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.23■□□□□ 0.67
SEMA3DO95025 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEMA3DO95025 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEMA3DO95025 AC093787.1-201ENST00000450396 207 ntBASIC19.23■□□□□ 0.67
SEMA3DO95025 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.23■□□□□ 0.67
SEMA3DO95025 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.23■□□□□ 0.67
SEMA3DO95025 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SEMA3DO95025 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SEMA3DO95025 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SEMA3DO95025 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SEMA3DO95025 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.23■□□□□ 0.67
SEMA3DO95025 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SEMA3DO95025 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms