Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 AC126177.7-201ENST00000547904 679 ntBASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 AP000997.3-201ENST00000623333 2250 ntBASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 PCDHB18P-201ENST00000524813 2368 ntBASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CHKB-CPT1BH3BT56 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 GOLGA2P6-201ENST00000340929 2049 ntBASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 AC008813.1-201ENST00000536597 885 ntBASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CHKB-CPT1BH3BT56 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
CHKB-CPT1BH3BT56 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CHKB-CPT1BH3BT56 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CHKB-CPT1BH3BT56 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
CHKB-CPT1BH3BT56 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CHKB-CPT1BH3BT56 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC11.2□□□□□ -0.62
CHKB-CPT1BH3BT56 AL022069.1-201ENST00000568025 1636 ntBASIC11.2□□□□□ -0.62
CHKB-CPT1BH3BT56 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms