Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 DGCR10-201ENST00000609839 495 ntBASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 AC006538.3-201ENST00000612495 578 ntBASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
COL6A6A6NMZ7 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 FAM86EP-206ENST00000510506 987 ntBASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 AC005332.1-201ENST00000577698 1310 ntBASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL6A6A6NMZ7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 AC092647.4-201ENST00000457211 535 ntBASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 AC091390.4-202ENST00000476426 537 ntBASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL6A6A6NMZ7 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 KRT18P16-201ENST00000510337 1294 ntBASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 RN7SL510P-201ENST00000581311 263 ntBASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 AL138966.2-201ENST00000621997 464 ntBASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL6A6A6NMZ7 FSCN1P1-201ENST00000568912 1481 ntBASIC18.21■□□□□ 0.5
COL6A6A6NMZ7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 FDX1P1-201ENST00000449115 551 ntBASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 AC093458.2-201ENST00000623150 629 ntBASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
COL6A6A6NMZ7 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms