Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
LRRC53A6NM62 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
LRRC53A6NM62 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.68■■□□□ 1.06
LRRC53A6NM62 AC034268.1-201ENST00000441047 882 ntBASIC21.68■■□□□ 1.06
LRRC53A6NM62 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.68■■□□□ 1.06
LRRC53A6NM62 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.68■■□□□ 1.06
LRRC53A6NM62 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC53A6NM62 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC53A6NM62 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.68■■□□□ 1.06
LRRC53A6NM62 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC53A6NM62 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC53A6NM62 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC53A6NM62 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC53A6NM62 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.68■■□□□ 1.06
LRRC53A6NM62 TMEM179-206ENST00000616017 1645 ntBASIC21.68■■□□□ 1.06
LRRC53A6NM62 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.68■■□□□ 1.06
LRRC53A6NM62 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.68■■□□□ 1.06
LRRC53A6NM62 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC53A6NM62 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC53A6NM62 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC53A6NM62 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.67■■□□□ 1.06
LRRC53A6NM62 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
LRRC53A6NM62 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.67■■□□□ 1.06
LRRC53A6NM62 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
LRRC53A6NM62 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.67■■□□□ 1.06
LRRC53A6NM62 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC53A6NM62 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC53A6NM62 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC53A6NM62 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC53A6NM62 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC53A6NM62 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC53A6NM62 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC53A6NM62 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC53A6NM62 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
LRRC53A6NM62 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRRC53A6NM62 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 AC007322.4-201ENST00000509611 723 ntBASIC21.65■■□□□ 1.06
LRRC53A6NM62 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRC53A6NM62 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.65■■□□□ 1.06
LRRC53A6NM62 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRRC53A6NM62 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.64■■□□□ 1.06
LRRC53A6NM62 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRRC53A6NM62 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRRC53A6NM62 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRRC53A6NM62 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRRC53A6NM62 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
LRRC53A6NM62 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRRC53A6NM62 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
LRRC53A6NM62 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LRRC53A6NM62 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
LRRC53A6NM62 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRRC53A6NM62 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LRRC53A6NM62 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LRRC53A6NM62 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.64■■□□□ 1.05
LRRC53A6NM62 AC087623.3-201ENST00000607047 1098 ntBASIC21.64■■□□□ 1.05
LRRC53A6NM62 AC013268.1-206ENST00000638368 961 ntBASIC21.64■■□□□ 1.05
LRRC53A6NM62 AC112229.1-201ENST00000639295 961 ntBASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms