Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC01354-202ENST00000435574 2860 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 AC024610.2-204ENST00000637478 2867 ntTSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 HHLA2-205ENST00000467562 1457 ntTSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 SMYD3-218ENST00000630181 1458 ntTSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 LINC00598-213ENST00000637438 1456 ntTSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 SLC7A6-201ENST00000219343 6251 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 MAP3K19-202ENST00000375844 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 CNPY1-204ENST00000636446 1637 ntAPPRIS P5 TSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 PRICKLE2-205ENST00000638394 9956 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 CCDC14-203ENST00000409697 2962 ntAPPRIS ALT2 TSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 NOS2-201ENST00000313735 4176 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 OR2AG2-201ENST00000338569 1069 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
MSX1P28360 RPGR-202ENST00000339363 3686 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 SP140-201ENST00000343805 2910 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
MSX1P28360 RNA5SP69-201ENST00000364477 117 ntBASIC8.33□□□□□ -1.08
MSX1P28360 SPATA46-201ENST00000367935 1711 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 RAD51B-201ENST00000390683 922 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 NDUFA3-202ENST00000391762 435 ntTSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 AP002761.1-201ENST00000400985 262 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 AL590617.1-201ENST00000405630 748 ntBASIC8.33□□□□□ -1.08
MSX1P28360 CDK8P2-201ENST00000415020 547 ntBASIC8.33□□□□□ -1.08
MSX1P28360 AL353611.1-201ENST00000417054 462 ntTSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 RPL7P53-201ENST00000421245 739 ntBASIC8.33□□□□□ -1.08
MSX1P28360 RPL23AP85-201ENST00000421838 433 ntBASIC8.33□□□□□ -1.08
MSX1P28360 LINC01399-201ENST00000423311 648 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 NR1I3-209ENST00000428574 1117 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 RPL7P7-201ENST00000428803 703 ntBASIC8.33□□□□□ -1.08
MSX1P28360 AC000041.1-201ENST00000439655 175 ntBASIC8.33□□□□□ -1.08
MSX1P28360 CNOT7P2-201ENST00000441051 832 ntBASIC8.33□□□□□ -1.08
MSX1P28360 PFN1P1-201ENST00000442087 423 ntBASIC8.33□□□□□ -1.08
MSX1P28360 MICC-201ENST00000445710 1055 ntBASIC8.33□□□□□ -1.08
MSX1P28360 LINC01696-201ENST00000448988 492 ntTSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 AC003666.1-201ENST00000454113 611 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 HNRNPCP7-201ENST00000456056 905 ntBASIC8.33□□□□□ -1.08
MSX1P28360 PSMA6P2-201ENST00000457574 686 ntBASIC8.33□□□□□ -1.08
MSX1P28360 AC022701.1-201ENST00000462935 622 ntBASIC8.33□□□□□ -1.08
MSX1P28360 RN7SL305P-201ENST00000464862 281 ntBASIC8.33□□□□□ -1.08
MSX1P28360 AC092965.1-201ENST00000469748 490 ntBASIC8.33□□□□□ -1.08
MSX1P28360 RPS4XP6-201ENST00000477670 797 ntBASIC8.33□□□□□ -1.08
MSX1P28360 AC069304.1-201ENST00000491593 704 ntBASIC8.33□□□□□ -1.08
MSX1P28360 RN7SL580P-201ENST00000492489 287 ntBASIC8.33□□□□□ -1.08
MSX1P28360 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC8.33□□□□□ -1.08
MSX1P28360 CORIN-208ENST00000508498 3200 ntAPPRIS ALT2 TSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 AMD1P3-201ENST00000508874 994 ntBASIC8.33□□□□□ -1.08
MSX1P28360 NR1I3-228ENST00000511676 1061 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 NR1I3-232ENST00000512372 861 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 AC022447.1-201ENST00000515358 464 ntBASIC8.33□□□□□ -1.08
MSX1P28360 NR1I3-234ENST00000515621 1130 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 NREP-223ENST00000515855 801 ntTSL 4 BASIC8.33□□□□□ -1.08
MSX1P28360 RNA5SP459-201ENST00000516628 100 ntBASIC8.33□□□□□ -1.08
MSX1P28360 AC021733.2-201ENST00000518830 497 ntBASIC8.33□□□□□ -1.08
MSX1P28360 RFPL4AP7-201ENST00000520120 215 ntBASIC8.33□□□□□ -1.08
MSX1P28360 BCAS2P1-201ENST00000528022 632 ntBASIC8.33□□□□□ -1.08
MSX1P28360 SMAD3-203ENST00000537194 1147 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 SOX5-213ENST00000541847 758 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 AC020612.1-201ENST00000547655 541 ntBASIC8.33□□□□□ -1.08
MSX1P28360 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 AC004023.1-201ENST00000561473 1744 ntBASIC8.33□□□□□ -1.08
MSX1P28360 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 AC073878.1-201ENST00000567503 474 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 FRG2GP-201ENST00000567870 615 ntBASIC8.33□□□□□ -1.08
MSX1P28360 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 AC020908.1-201ENST00000598893 280 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 AC011416.3-201ENST00000603971 355 ntBASIC8.33□□□□□ -1.08
MSX1P28360 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC8.33□□□□□ -1.08
MSX1P28360 HMGB1P51-201ENST00000605166 638 ntBASIC8.33□□□□□ -1.08
MSX1P28360 Metazoa_SRP.98-201ENST00000610878 274 ntBASIC8.33□□□□□ -1.08
MSX1P28360 GNAS-AS1_5.1-201ENST00000614281 121 ntBASIC8.33□□□□□ -1.08
MSX1P28360 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 LINC01835-203ENST00000639800 567 ntBASIC8.33□□□□□ -1.08
MSX1P28360 SH3BP5-AS1-202ENST00000420195 5570 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 RBM7-204ENST00000541475 6725 ntTSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 CEACAM5-201ENST00000221992 2874 ntAPPRIS P3 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 WISP3-204ENST00000368666 2700 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 EGF-206ENST00000509793 4489 ntTSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 B4GALT6-202ENST00000306851 3891 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 WNT2B-201ENST00000256640 2819 ntTSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 ATP6V0A1-201ENST00000264649 4110 ntAPPRIS P4 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 PAPD4-204ENST00000453514 3523 ntAPPRIS P3 TSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 C4orf46-202ENST00000508457 3358 ntTSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 EFTUD2-223ENST00000592576 3364 ntTSL 2 BASIC8.33□□□□□ -1.08
MSX1P28360 OVGP1-201ENST00000369732 2243 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 KRIT1-204ENST00000394507 4762 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 DZANK1-204ENST00000358866 3310 ntAPPRIS P2 TSL 5 BASIC8.32□□□□□ -1.08
MSX1P28360 ARMCX3-207ENST00000537169 3318 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 OR4K17-202ENST00000641386 4886 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
MSX1P28360 TANC2-201ENST00000389520 6404 ntTSL 5 BASIC8.32□□□□□ -1.08
MSX1P28360 FANCB-202ENST00000398334 3008 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 ZNF333-201ENST00000292530 4672 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 DCAF1-202ENST00000423656 5946 ntAPPRIS P4 TSL 5 BASIC8.32□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms