Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 AC021491.4-201ENST00000620769 2573 ntBASIC8.36□□□□□ -1.07
MSX1P28360 LINC01748-205ENST00000635616 2143 ntTSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 HOXA1-201ENST00000343060 2517 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 TMEM116-213ENST00000550831 1446 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 PPP2R1B-201ENST00000311129 2082 ntAPPRIS P4 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 PALM2-AKAP2-202ENST00000374530 7507 ntTSL 2 BASIC8.36□□□□□ -1.07
MSX1P28360 TBC1D3P1-DHX40P1-201ENST00000587125 1841 ntTSL 2 BASIC8.36□□□□□ -1.07
MSX1P28360 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSX1P28360 ABI1-208ENST00000376160 3515 ntAPPRIS ALT1 TSL 5 BASIC8.36□□□□□ -1.07
MSX1P28360 FKBP14-201ENST00000222803 4960 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 CAB39L-202ENST00000355854 3676 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 AC008895.1-201ENST00000624074 2622 ntBASIC8.35□□□□□ -1.07
MSX1P28360 STXBP5L-208ENST00000497029 3036 ntTSL 5 BASIC8.35□□□□□ -1.07
MSX1P28360 RSPH10B2-202ENST00000403107 3220 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 RSPH10B-203ENST00000405415 3222 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 NDUFV3-201ENST00000340344 4676 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 FBXW7-205ENST00000603548 2562 ntAPPRIS P4 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 CSF1R-201ENST00000286301 3989 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
MSX1P28360 SEZ6L-204ENST00000402979 3306 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 AKAP4-202ENST00000376064 2864 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 ODF2L-213ENST00000478286 1650 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 IL13-201ENST00000304506 1283 ntAPPRIS P2 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 OR4N4-201ENST00000328795 1126 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
MSX1P28360 Y_RNA.11-201ENST00000362375 109 ntBASIC8.35□□□□□ -1.07
MSX1P28360 RPL7P27-201ENST00000403775 720 ntBASIC8.35□□□□□ -1.07
MSX1P28360 CENPIP1-201ENST00000425713 902 ntBASIC8.35□□□□□ -1.07
MSX1P28360 IPMKP1-201ENST00000425988 855 ntBASIC8.35□□□□□ -1.07
MSX1P28360 RFX3-AS1-202ENST00000427722 1088 ntTSL 5 BASIC8.35□□□□□ -1.07
MSX1P28360 AC013467.1-201ENST00000430717 1041 ntBASIC8.35□□□□□ -1.07
MSX1P28360 C5orf24-203ENST00000435259 851 ntAPPRIS P1 TSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 AC012501.2-201ENST00000437634 1281 ntBASIC8.35□□□□□ -1.07
MSX1P28360 HCG20-208ENST00000439406 1202 ntTSL 2 BASIC8.35□□□□□ -1.07
MSX1P28360 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC8.35□□□□□ -1.07
MSX1P28360 AC073583.1-201ENST00000447553 400 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AL161646.1-201ENST00000447860 1013 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 RHEBP2-201ENST00000450289 600 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AL596188.1-201ENST00000452888 370 ntTSL 5 BASIC8.35□□□□□ -1.07
MSX1P28360 MTND2P24-201ENST00000453434 806 ntBASIC8.35□□□□□ -1.07
MSX1P28360 Z95152.1-201ENST00000453556 656 ntBASIC8.35□□□□□ -1.07
MSX1P28360 NECAP1P2-201ENST00000455668 727 ntBASIC8.35□□□□□ -1.07
MSX1P28360 SUMO2P2-201ENST00000456482 255 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AL031727.1-201ENST00000457263 455 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AL603882.1-201ENST00000463059 681 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AC084754.1-201ENST00000463466 464 ntBASIC8.35□□□□□ -1.07
MSX1P28360 RN7SL507P-201ENST00000474076 296 ntBASIC8.35□□□□□ -1.07
MSX1P28360 ATXN7L1-208ENST00000478915 1115 ntTSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 RPL12P37-201ENST00000486874 495 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC8.35□□□□□ -1.07
MSX1P28360 AC136628.1-201ENST00000503218 561 ntTSL 4 BASIC8.35□□□□□ -1.07
MSX1P28360 FAM177A1P1-201ENST00000503598 473 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AC008885.2-201ENST00000509506 930 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 AC093281.1-201ENST00000514239 549 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AC100860.1-201ENST00000517606 1064 ntTSL 4 BASIC8.35□□□□□ -1.07
MSX1P28360 AC008514.1-201ENST00000521965 602 ntTSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 AP001767.2-201ENST00000527291 382 ntBASIC8.35□□□□□ -1.07
MSX1P28360 OR10Y1P-201ENST00000528485 974 ntBASIC8.35□□□□□ -1.07
MSX1P28360 NDUFS5P6-201ENST00000529136 295 ntBASIC8.35□□□□□ -1.07
MSX1P28360 OR8I1P-201ENST00000529291 931 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 AC087897.1-201ENST00000550134 156 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC8.35□□□□□ -1.07
MSX1P28360 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 GARSP1-201ENST00000570895 719 ntBASIC8.35□□□□□ -1.07
MSX1P28360 TTN-AS1-218ENST00000586452 828 ntTSL 5 BASIC8.35□□□□□ -1.07
MSX1P28360 AC026458.2-201ENST00000589323 531 ntTSL 5 BASIC8.35□□□□□ -1.07
MSX1P28360 ZNF799-204ENST00000595766 576 ntTSL 4 BASIC8.35□□□□□ -1.07
MSX1P28360 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 CCL4L2-211ENST00000613173 741 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 AC244093.5-201ENST00000619606 718 ntTSL 4 BASIC8.35□□□□□ -1.07
MSX1P28360 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 AC135068.3-201ENST00000623441 1125 ntAPPRIS P1 BASIC8.35□□□□□ -1.07
MSX1P28360 AF246928.1-201ENST00000623768 87 ntBASIC8.35□□□□□ -1.07
MSX1P28360 NEK6-204ENST00000373603 3447 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 SZRD1-202ENST00000401089 3447 ntTSL 2 BASIC8.35□□□□□ -1.07
MSX1P28360 RAB3GAP1-203ENST00000442034 4185 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 AC009948.1-205ENST00000453026 2007 ntTSL 3 BASIC8.35□□□□□ -1.07
MSX1P28360 AC124017.1-202ENST00000506950 1616 ntTSL 2 BASIC8.35□□□□□ -1.07
MSX1P28360 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC8.35□□□□□ -1.07
MSX1P28360 AF254983.1-201ENST00000612267 3336 ntTSL 5 BASIC8.35□□□□□ -1.07
MSX1P28360 SPTAN1-223ENST00000630866 7498 ntTSL 5 BASIC8.35□□□□□ -1.07
MSX1P28360 LILRA2-201ENST00000251376 4429 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 FADS1-211ENST00000536991 2701 ntTSL 2 BASIC8.35□□□□□ -1.07
MSX1P28360 LINC02011-201ENST00000566553 3830 ntTSL 2 BASIC8.35□□□□□ -1.07
MSX1P28360 SEZ6L-205ENST00000403121 3078 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSX1P28360 ZNF385B-203ENST00000409692 2109 ntTSL 5 BASIC8.35□□□□□ -1.07
MSX1P28360 ZNF587P1-201ENST00000415378 1386 ntBASIC8.35□□□□□ -1.07
MSX1P28360 AC020951.1-201ENST00000624361 2271 ntBASIC8.34□□□□□ -1.07
MSX1P28360 SYNPO2-204ENST00000448416 4298 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 ACSM6-202ENST00000341686 1712 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 TESK2-201ENST00000372084 2600 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 AJUBA-203ENST00000397388 2648 ntTSL 2 BASIC8.34□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms