Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 KRT19P1-201ENST00000405746 1186 ntBASIC18.19■□□□□ 0.5
HINT3Q9NQE9 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 DPP3P2-201ENST00000416030 1696 ntBASIC18.18■□□□□ 0.5
HINT3Q9NQE9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 KRT8P36-201ENST00000489121 1440 ntBASIC18.18■□□□□ 0.5
HINT3Q9NQE9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 AP001160.3-201ENST00000601484 763 ntBASIC18.18■□□□□ 0.5
HINT3Q9NQE9 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.18■□□□□ 0.5
HINT3Q9NQE9 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 AC091799.1-201ENST00000422823 811 ntBASIC18.17■□□□□ 0.5
HINT3Q9NQE9 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 KRT18P61-201ENST00000585825 1298 ntBASIC18.17■□□□□ 0.5
HINT3Q9NQE9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HINT3Q9NQE9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 AL691432.2-201ENST00000607222 2038 ntBASIC18.16■□□□□ 0.5
HINT3Q9NQE9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HINT3Q9NQE9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HINT3Q9NQE9 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.15■□□□□ 0.5
HINT3Q9NQE9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.15■□□□□ 0.5
HINT3Q9NQE9 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HINT3Q9NQE9 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HINT3Q9NQE9 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.15■□□□□ 0.5
HINT3Q9NQE9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms