Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 KRT18P6-201ENST00000555540 1265 ntBASIC20.78■□□□□ 0.92
USP29Q9HBJ7 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 AC013268.1-206ENST00000638368 961 ntBASIC20.78■□□□□ 0.92
USP29Q9HBJ7 AC112229.1-201ENST00000639295 961 ntBASIC20.78■□□□□ 0.92
USP29Q9HBJ7 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP29Q9HBJ7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 CNN2P6-201ENST00000439038 900 ntBASIC20.77■□□□□ 0.92
USP29Q9HBJ7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 AC133041.1-202ENST00000642053 222 ntBASIC20.77■□□□□ 0.92
USP29Q9HBJ7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP29Q9HBJ7 AC087633.2-202ENST00000565166 1439 ntBASIC20.77■□□□□ 0.91
USP29Q9HBJ7 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.77■□□□□ 0.91
USP29Q9HBJ7 DPP3P2-201ENST00000416030 1696 ntBASIC20.77■□□□□ 0.91
USP29Q9HBJ7 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 CYP21A1P-202ENST00000354927 1481 ntBASIC20.76■□□□□ 0.91
USP29Q9HBJ7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.76■□□□□ 0.91
USP29Q9HBJ7 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 AC069152.1-201ENST00000438030 544 ntBASIC20.75■□□□□ 0.91
USP29Q9HBJ7 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 AL356652.1-201ENST00000615962 565 ntBASIC20.75■□□□□ 0.91
USP29Q9HBJ7 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.75■□□□□ 0.91
USP29Q9HBJ7 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP29Q9HBJ7 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP29Q9HBJ7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms