Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ZNF540Q8NDQ6 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 AC120498.9-201ENST00000339021 3867 ntBASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 BX005040.4-201ENST00000637145 1518 ntBASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF540Q8NDQ6 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
ZNF540Q8NDQ6 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.58■□□□□ 0.57
ZNF540Q8NDQ6 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.58■□□□□ 0.57
ZNF540Q8NDQ6 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ZNF540Q8NDQ6 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
ZNF540Q8NDQ6 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.58■□□□□ 0.57
ZNF540Q8NDQ6 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF540Q8NDQ6 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
ZNF540Q8NDQ6 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF540Q8NDQ6 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.58■□□□□ 0.56
ZNF540Q8NDQ6 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.58■□□□□ 0.56
ZNF540Q8NDQ6 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF540Q8NDQ6 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF540Q8NDQ6 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
ZNF540Q8NDQ6 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF540Q8NDQ6 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF540Q8NDQ6 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
ZNF540Q8NDQ6 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF540Q8NDQ6 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
ZNF540Q8NDQ6 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF540Q8NDQ6 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF540Q8NDQ6 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF540Q8NDQ6 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF540Q8NDQ6 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.56■□□□□ 0.56
ZNF540Q8NDQ6 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms