Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 MAX-217ENST00000557277 728 ntTSL 3 BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 AC026471.5-201ENST00000615068 467 ntBASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
USHBP1Q8N6Y0 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 AL049796.1-201ENST00000565336 1766 ntBASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 AF186192.3-201ENST00000583427 947 ntBASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC26.74■■□□□ 1.87
USHBP1Q8N6Y0 AC121338.2-201ENST00000622535 1744 ntBASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 PNN-205ENST00000556530 601 ntTSL 2 BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 AL353708.3-201ENST00000610272 989 ntBASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 NBPF21P-201ENST00000425093 1451 ntBASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
USHBP1Q8N6Y0 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 AP003071.4-201ENST00000562276 1284 ntBASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
USHBP1Q8N6Y0 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 STK25-234ENST00000535007 2459 ntTSL 2 BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 FAM197Y1-201ENST00000421178 764 ntBASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 RPS15-203ENST00000586096 570 ntTSL 2 BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 AL121603.2-201ENST00000557373 2117 ntBASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USHBP1Q8N6Y0 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
USHBP1Q8N6Y0 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC26.7■■□□□ 1.87
USHBP1Q8N6Y0 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.87
USHBP1Q8N6Y0 AF106564.1-201ENST00000607058 2553 ntBASIC26.7■■□□□ 1.87
USHBP1Q8N6Y0 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
USHBP1Q8N6Y0 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
USHBP1Q8N6Y0 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
USHBP1Q8N6Y0 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC26.7■■□□□ 1.86
USHBP1Q8N6Y0 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC26.7■■□□□ 1.86
USHBP1Q8N6Y0 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.86
USHBP1Q8N6Y0 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC26.7■■□□□ 1.86
USHBP1Q8N6Y0 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
USHBP1Q8N6Y0 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC26.7■■□□□ 1.86
USHBP1Q8N6Y0 AC012306.2-201ENST00000609350 630 ntBASIC26.7■■□□□ 1.86
USHBP1Q8N6Y0 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.86
USHBP1Q8N6Y0 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms