Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 RARRES2P11-201ENST00000635158 484 ntBASIC17.96■□□□□ 0.47
CCDC58Q4VC31 MIR2861-201ENST00000636310 90 ntBASIC17.96■□□□□ 0.47
CCDC58Q4VC31 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 AC120498.9-201ENST00000339021 3867 ntBASIC17.96■□□□□ 0.47
CCDC58Q4VC31 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 NEFHP1-201ENST00000412845 2629 ntBASIC17.96■□□□□ 0.47
CCDC58Q4VC31 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
CCDC58Q4VC31 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.96■□□□□ 0.46
CCDC58Q4VC31 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
CCDC58Q4VC31 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
CCDC58Q4VC31 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 AC005332.8-201ENST00000622750 2735 ntBASIC17.95■□□□□ 0.46
CCDC58Q4VC31 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 AC245052.3-201ENST00000450182 901 ntBASIC17.95■□□□□ 0.46
CCDC58Q4VC31 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 KRT16P2-201ENST00000414673 1423 ntBASIC17.95■□□□□ 0.46
CCDC58Q4VC31 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC58Q4VC31 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC58Q4VC31 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 AC004408.2-201ENST00000623613 2777 ntBASIC17.93■□□□□ 0.46
CCDC58Q4VC31 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC58Q4VC31 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms