Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 CFT2YLR115W 2580 nt2.86□□□□□ -1.95
UBP3Q01477 SPO22YIL073C 2928 nt2.86□□□□□ -1.95
UBP3Q01477 MPT5YGL178W 2580 nt2.85□□□□□ -1.95
UBP3Q01477 YIL174WYIL174W 228 nt2.85□□□□□ -1.95
UBP3Q01477 YJL222W-AYJL222W-A 228 nt2.85□□□□□ -1.95
UBP3Q01477 ECM29YHL030W 5607 nt2.85□□□□□ -1.95
UBP3Q01477 MET18YIL128W 3099 nt2.84□□□□□ -1.95
UBP3Q01477 YDR524C-AYDR524C-A 120 nt2.84□□□□□ -1.95
UBP3Q01477 EDS1YBR033W 2760 nt2.83□□□□□ -1.96
UBP3Q01477 YLR154W-AYLR154W-A 186 nt2.83□□□□□ -1.96
UBP3Q01477 EFR3YMR212C 2349 nt2.83□□□□□ -1.96
UBP3Q01477 DNA2YHR164C 4569 nt2.83□□□□□ -1.96
UBP3Q01477 CYR1YJL005W 6081 nt2.82□□□□□ -1.96
UBP3Q01477 tW(CCA)G1tW(CCA)G1 72 nt2.82□□□□□ -1.96
UBP3Q01477 tW(CCA)G2tW(CCA)G2 72 nt2.82□□□□□ -1.96
UBP3Q01477 tW(CCA)JtW(CCA)J 72 nt2.82□□□□□ -1.96
UBP3Q01477 tW(CCA)KtW(CCA)K 72 nt2.82□□□□□ -1.96
UBP3Q01477 tW(CCA)MtW(CCA)M 72 nt2.82□□□□□ -1.96
UBP3Q01477 tW(CCA)PtW(CCA)P 72 nt2.82□□□□□ -1.96
UBP3Q01477 PAU8YAL068C 363 nt2.82□□□□□ -1.96
UBP3Q01477 INP2YMR163C 2118 nt2.82□□□□□ -1.96 RIP-Chip
UBP3Q01477 YBL053WYBL053W 375 nt2.82□□□□□ -1.96
UBP3Q01477 PAU20YOL161C 363 nt2.82□□□□□ -1.96
UBP3Q01477 snR52snR52 92 nt2.82□□□□□ -1.96
UBP3Q01477 YDR239CYDR239C 2364 nt2.82□□□□□ -1.96
UBP3Q01477 PXA2YKL188C 2562 nt2.82□□□□□ -1.96 RIP-Chip
UBP3Q01477 SSQ1YLR369W 1974 nt2.81□□□□□ -1.96
UBP3Q01477 YLR149CYLR149C 2193 nt2.81□□□□□ -1.96
UBP3Q01477 ACM1YPL267W 630 nt2.81□□□□□ -1.96
UBP3Q01477 VPS34YLR240W 2628 nt2.8□□□□□ -1.96
UBP3Q01477 NIP100YPL174C 2607 nt2.8□□□□□ -1.96
UBP3Q01477 SMY1YKL079W 1971 nt2.8□□□□□ -1.96
UBP3Q01477 ESC1YMR219W 4977 nt2.8□□□□□ -1.96 RIP-Chip
UBP3Q01477 SEF1YBL066C 3447 nt2.8□□□□□ -1.96
UBP3Q01477 SRO77YBL106C 3033 nt2.8□□□□□ -1.96
UBP3Q01477 BUB1YGR188C 3066 nt2.79□□□□□ -1.96 RIP-Chip
UBP3Q01477 MGM1YOR211C 2646 nt2.79□□□□□ -1.96
UBP3Q01477 IRR1YIL026C 3453 nt2.79□□□□□ -1.96
UBP3Q01477 BCK1YJL095W 4437 nt2.79□□□□□ -1.96 RIP-Chip
UBP3Q01477 HYP2YEL034W 474 nt2.79□□□□□ -1.96 RIP-Chip
UBP3Q01477 SCH9YHR205W 2475 nt2.79□□□□□ -1.96
UBP3Q01477 UBP15YMR304W 3693 nt2.78□□□□□ -1.96
UBP3Q01477 VPS8YAL002W 3825 nt2.78□□□□□ -1.96
UBP3Q01477 YLR146W-AYLR146W-A 189 nt2.78□□□□□ -1.96
UBP3Q01477 ESL2YKR096W 3588 nt2.78□□□□□ -1.96
UBP3Q01477 PRP42YDR235W 1635 nt2.78□□□□□ -1.96
UBP3Q01477 VPH1YOR270C 2523 nt2.78□□□□□ -1.96
UBP3Q01477 RPS17AYML024W 411 nt2.77□□□□□ -1.97 RIP-Chip
UBP3Q01477 SIR3YLR442C 2937 nt2.77□□□□□ -1.97 RIP-Chip
UBP3Q01477 STB4YMR019W 2850 nt2.77□□□□□ -1.97
UBP3Q01477 PEP3YLR148W 2757 nt2.77□□□□□ -1.97
UBP3Q01477 TOR1YJR066W 7413 nt2.76□□□□□ -1.97
UBP3Q01477 CLN3YAL040C 1743 nt2.76□□□□□ -1.97 RIP-Chip
UBP3Q01477 SPO75YLL005C 2607 nt2.76□□□□□ -1.97
UBP3Q01477 YPR097WYPR097W 3222 nt2.76□□□□□ -1.97
UBP3Q01477 SNU13YEL026W 381 nt2.76□□□□□ -1.97
UBP3Q01477 ECM12YHR021W-A 456 nt2.76□□□□□ -1.97
UBP3Q01477 YHR032W-AYHR032W-A 180 nt2.76□□□□□ -1.97
UBP3Q01477 snR43snR43 209 nt2.76□□□□□ -1.97
UBP3Q01477 YPP1YGR198W 2454 nt2.76□□□□□ -1.97
UBP3Q01477 YBR184WYBR184W 1572 nt2.75□□□□□ -1.97
UBP3Q01477 GRR1YJR090C 3456 nt2.75□□□□□ -1.97
UBP3Q01477 MNE1YOR350C 1992 nt2.75□□□□□ -1.97
UBP3Q01477 MNL2YLR057W 2550 nt2.75□□□□□ -1.97
UBP3Q01477 SGM1YJR134C 2124 nt2.75□□□□□ -1.97
UBP3Q01477 RPO41YFL036W 4056 nt2.74□□□□□ -1.97
UBP3Q01477 SEC26YDR238C 2922 nt2.74□□□□□ -1.97 RIP-Chip
UBP3Q01477 snR70snR70 164 nt2.74□□□□□ -1.97
UBP3Q01477 ULI1YFR026C 510 nt2.74□□□□□ -1.97
UBP3Q01477 YNL114CYNL114C 372 nt2.74□□□□□ -1.97
UBP3Q01477 ZRG8YER033C 3231 nt2.74□□□□□ -1.97
UBP3Q01477 SNF5YBR289W 2718 nt2.74□□□□□ -1.97
UBP3Q01477 SIR4YDR227W 4077 nt2.73□□□□□ -1.97
UBP3Q01477 FKS3YMR306W 5358 nt2.73□□□□□ -1.97
UBP3Q01477 PDR1YGL013C 3207 nt2.73□□□□□ -1.97
UBP3Q01477 YHR210CYHR210C 1026 nt2.73□□□□□ -1.97 RIP-Chip
UBP3Q01477 YBL109WYBL109W 336 nt2.73□□□□□ -1.97
UBP3Q01477 SET2YJL168C 2202 nt2.73□□□□□ -1.97 RIP-Chip
UBP3Q01477 RPH1YER169W 2391 nt2.73□□□□□ -1.97
UBP3Q01477 UBR1YGR184C 5853 nt2.72□□□□□ -1.97
UBP3Q01477 TRA1YHR099W 11235 nt2.71□□□□□ -1.98
UBP3Q01477 SGS1YMR190C 4344 nt2.71□□□□□ -1.98 RIP-Chip
UBP3Q01477 RTT107YHR154W 3213 nt2.71□□□□□ -1.98
UBP3Q01477 SPC98YNL126W 2541 nt2.71□□□□□ -1.98
UBP3Q01477 PMP1YCR024C-A 123 nt2.71□□□□□ -1.98
UBP3Q01477 TIM9YEL020W-A 264 nt2.71□□□□□ -1.98
UBP3Q01477 RPL34BYIL052C 366 nt2.71□□□□□ -1.98
UBP3Q01477 YOR218CYOR218C 420 nt2.71□□□□□ -1.98
UBP3Q01477 SLN1YIL147C 3663 nt2.71□□□□□ -1.98
UBP3Q01477 BNR1YIL159W 4128 nt2.7□□□□□ -1.98
UBP3Q01477 PTP3YER075C 2787 nt2.7□□□□□ -1.98
UBP3Q01477 YDR003W-AYDR003W-A 123 nt2.7□□□□□ -1.98
UBP3Q01477 YEL073CYEL073C 324 nt2.7□□□□□ -1.98
UBP3Q01477 YOR055WYOR055W 435 nt2.7□□□□□ -1.98
UBP3Q01477 RPL33BYOR234C 324 nt2.7□□□□□ -1.98 RIP-Chip
UBP3Q01477 PSD2YGR170W 3417 nt2.7□□□□□ -1.98
UBP3Q01477 PDR3YBL005W 2931 nt2.7□□□□□ -1.98
UBP3Q01477 YLL007CYLL007C 1998 nt2.69□□□□□ -1.98
UBP3Q01477 NAB6YML117W 3405 nt2.69□□□□□ -1.98
UBP3Q01477 SWR1YDR334W 4545 nt2.69□□□□□ -1.98 RIP-Chip
Retrieved 100 of 7,029 protein–RNA pairs in 27 ms