Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 VPS55YJR044C 423 nt2.46□□□□□ -2.02
SSL2Q00578 YPR002C-AYPR002C-A 198 nt2.46□□□□□ -2.02
SSL2Q00578 PDR11YIL013C 4236 nt2.46□□□□□ -2.02
SSL2Q00578 UFD4YKL010C 4452 nt2.46□□□□□ -2.02
SSL2Q00578 CSF1YLR087C 8877 nt2.46□□□□□ -2.02
SSL2Q00578 YFR016CYFR016C 3702 nt2.45□□□□□ -2.02
SSL2Q00578 YJL135WYJL135W 318 nt2.45□□□□□ -2.02
SSL2Q00578 snR43snR43 209 nt2.45□□□□□ -2.02
SSL2Q00578 VMA9YCL005W-A 222 nt2.45□□□□□ -2.02
SSL2Q00578 PEX8YGR077C 1770 nt2.45□□□□□ -2.02
SSL2Q00578 RGA2YDR379W 3030 nt2.44□□□□□ -2.02
SSL2Q00578 CDC27YBL084C 2277 nt2.44□□□□□ -2.02
SSL2Q00578 FMP16YDR070C 282 nt2.44□□□□□ -2.02
SSL2Q00578 YEL014CYEL014C 306 nt2.44□□□□□ -2.02
SSL2Q00578 SMC6YLR383W 3345 nt2.44□□□□□ -2.02
SSL2Q00578 YKU70YMR284W 1809 nt2.44□□□□□ -2.02
SSL2Q00578 PDE2YOR360C 1581 nt2.44□□□□□ -2.02
SSL2Q00578 DNA2YHR164C 4569 nt2.44□□□□□ -2.02
SSL2Q00578 SPP41YDR464W 4308 nt2.43□□□□□ -2.02
SSL2Q00578 INO80YGL150C 4470 nt2.43□□□□□ -2.02
SSL2Q00578 OLI1Q0130 231 nt2.43□□□□□ -2.02
SSL2Q00578 YJL052C-AYJL052C-A 120 nt2.43□□□□□ -2.02
SSL2Q00578 YLR149CYLR149C 2193 nt2.43□□□□□ -2.02
SSL2Q00578 SCP160YJL080C 3669 nt2.43□□□□□ -2.02
SSL2Q00578 CFT2YLR115W 2580 nt2.42□□□□□ -2.02
SSL2Q00578 YNL097C-BYNL097C-B 123 nt2.42□□□□□ -2.02
SSL2Q00578 YBR277CYBR277C 402 nt2.42□□□□□ -2.02
SSL2Q00578 SEF1YBL066C 3447 nt2.42□□□□□ -2.02
SSL2Q00578 VPS34YLR240W 2628 nt2.42□□□□□ -2.02
SSL2Q00578 PLC1YPL268W 2610 nt2.42□□□□□ -2.02
SSL2Q00578 TRA1YHR099W 11235 nt2.42□□□□□ -2.02
SSL2Q00578 CBF2YGR140W 2871 nt2.42□□□□□ -2.02
SSL2Q00578 SSQ1YLR369W 1974 nt2.41□□□□□ -2.02
SSL2Q00578 TOF1YNL273W 3717 nt2.41□□□□□ -2.02
SSL2Q00578 SEC31YDL195W 3822 nt2.41□□□□□ -2.02
SSL2Q00578 YDR286CYDR286C 345 nt2.41□□□□□ -2.02
SSL2Q00578 SDH6YDR379C-A 240 nt2.41□□□□□ -2.02
SSL2Q00578 RRT15YLR162W-A 189 nt2.41□□□□□ -2.02
SSL2Q00578 EFR3YMR212C 2349 nt2.41□□□□□ -2.02
SSL2Q00578 REV3YPL167C 4515 nt2.4□□□□□ -2.02
SSL2Q00578 PXA2YKL188C 2562 nt2.4□□□□□ -2.02
SSL2Q00578 MRP10YDL045W-A 288 nt2.4□□□□□ -2.03
SSL2Q00578 TIM9YEL020W-A 264 nt2.4□□□□□ -2.03
SSL2Q00578 SPO22YIL073C 2928 nt2.39□□□□□ -2.03
SSL2Q00578 KAP123YER110C 3342 nt2.39□□□□□ -2.03
SSL2Q00578 VPS54YDR027C 2670 nt2.39□□□□□ -2.03
SSL2Q00578 TAE2YPL009C 3117 nt2.39□□□□□ -2.03
SSL2Q00578 snR74snR74 88 nt2.39□□□□□ -2.03
SSL2Q00578 YPR092WYPR092W 306 nt2.39□□□□□ -2.03
SSL2Q00578 PDR3YBL005W 2931 nt2.39□□□□□ -2.03
SSL2Q00578 VPH1YOR270C 2523 nt2.39□□□□□ -2.03
SSL2Q00578 STB4YMR019W 2850 nt2.39□□□□□ -2.03
SSL2Q00578 SWR1YDR334W 4545 nt2.38□□□□□ -2.03
SSL2Q00578 UBP2YOR124C 3819 nt2.38□□□□□ -2.03
SSL2Q00578 NAB6YML117W 3405 nt2.38□□□□□ -2.03
SSL2Q00578 SPT21YMR179W 2277 nt2.38□□□□□ -2.03
SSL2Q00578 MPT5YGL178W 2580 nt2.38□□□□□ -2.03
SSL2Q00578 GRR1YJR090C 3456 nt2.38□□□□□ -2.03
SSL2Q00578 SAP190YKR028W 3102 nt2.38□□□□□ -2.03
SSL2Q00578 PEP3YLR148W 2757 nt2.37□□□□□ -2.03
SSL2Q00578 YGL217CYGL217C 342 nt2.37□□□□□ -2.03
SSL2Q00578 YBR184WYBR184W 1572 nt2.36□□□□□ -2.03
SSL2Q00578 UTP22YGR090W 3714 nt2.36□□□□□ -2.03
SSL2Q00578 APL5YPL195W 2799 nt2.36□□□□□ -2.03
SSL2Q00578 YKL165C-AYKL165C-A 234 nt2.36□□□□□ -2.03
SSL2Q00578 YOR376WYOR376W 369 nt2.36□□□□□ -2.03
SSL2Q00578 YBR182C-AYBR182C-A 195 nt2.36□□□□□ -2.03
SSL2Q00578 INP2YMR163C 2118 nt2.36□□□□□ -2.03
SSL2Q00578 snR70snR70 164 nt2.35□□□□□ -2.03
SSL2Q00578 PAU8YAL068C 363 nt2.35□□□□□ -2.03
SSL2Q00578 YLR146W-AYLR146W-A 189 nt2.35□□□□□ -2.03
SSL2Q00578 RPS17AYML024W 411 nt2.35□□□□□ -2.03
SSL2Q00578 YNL114CYNL114C 372 nt2.35□□□□□ -2.03
SSL2Q00578 PAU20YOL161C 363 nt2.35□□□□□ -2.03
SSL2Q00578 SEC5YDR166C 2916 nt2.35□□□□□ -2.03
SSL2Q00578 IRA2YOL081W 9240 nt2.35□□□□□ -2.03
SSL2Q00578 MUK1YPL070W 1839 nt2.34□□□□□ -2.03
SSL2Q00578 YIR030W-AYIR030W-A 384 nt2.34□□□□□ -2.03
SSL2Q00578 SNC1YAL030W 354 nt2.34□□□□□ -2.03
SSL2Q00578 YBR131C-AYBR131C-A 90 nt2.34□□□□□ -2.03
SSL2Q00578 SMY1YKL079W 1971 nt2.34□□□□□ -2.04
SSL2Q00578 STH1YIL126W 4080 nt2.33□□□□□ -2.04
SSL2Q00578 TOR1YJR066W 7413 nt2.33□□□□□ -2.04
SSL2Q00578 RIC1YLR039C 3171 nt2.33□□□□□ -2.04
SSL2Q00578 VTC3YPL019C 2508 nt2.33□□□□□ -2.04
SSL2Q00578 RPL42BYHR141C 321 nt2.33□□□□□ -2.04
SSL2Q00578 RPL42AYNL162W 321 nt2.33□□□□□ -2.04
SSL2Q00578 YNL205CYNL205C 423 nt2.33□□□□□ -2.04
SSL2Q00578 snR46snR46 197 nt2.33□□□□□ -2.04
SSL2Q00578 YPR097WYPR097W 3222 nt2.32□□□□□ -2.04
SSL2Q00578 BNI1YNL271C 5862 nt2.32□□□□□ -2.04
SSL2Q00578 VMR1YHL035C 4779 nt2.32□□□□□ -2.04
SSL2Q00578 snR72snR72 98 nt2.32□□□□□ -2.04
SSL2Q00578 SGF11YPL047W 300 nt2.32□□□□□ -2.04
SSL2Q00578 RPH1YER169W 2391 nt2.32□□□□□ -2.04
SSL2Q00578 AFI1YOR129C 2682 nt2.32□□□□□ -2.04
SSL2Q00578 COS111YBR203W 2775 nt2.31□□□□□ -2.04
SSL2Q00578 BRE1YDL074C 2103 nt2.31□□□□□ -2.04
SSL2Q00578 YHR180W-AYHR180W-A 183 nt2.31□□□□□ -2.04
SSL2Q00578 YBL083CYBL083C 426 nt2.31□□□□□ -2.04
Retrieved 100 of 7,029 protein–RNA pairs in 71.1 ms