Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC14.76□□□□□ -0.05
PRKDCP78527 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC14.76□□□□□ -0.05
PRKDCP78527 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.76□□□□□ -0.05
PRKDCP78527 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC14.76□□□□□ -0.05
PRKDCP78527 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PRKDCP78527 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC14.75□□□□□ -0.05
PRKDCP78527 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PRKDCP78527 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PRKDCP78527 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
PRKDCP78527 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
PRKDCP78527 HMGA1P5-201ENST00000412453 271 ntBASIC14.75□□□□□ -0.05
PRKDCP78527 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PRKDCP78527 UNC93B7-201ENST00000509439 705 ntBASIC14.75□□□□□ -0.05
PRKDCP78527 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
PRKDCP78527 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PRKDCP78527 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC14.75□□□□□ -0.05
PRKDCP78527 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PRKDCP78527 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PRKDCP78527 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC14.75□□□□□ -0.05
PRKDCP78527 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PRKDCP78527 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PRKDCP78527 COX11P1-201ENST00000489116 835 ntBASIC14.75□□□□□ -0.05
PRKDCP78527 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC14.75□□□□□ -0.05
PRKDCP78527 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
PRKDCP78527 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PRKDCP78527 CD70-202ENST00000423145 881 ntTSL 2 BASIC14.74□□□□□ -0.05
PRKDCP78527 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.74□□□□□ -0.05
PRKDCP78527 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PRKDCP78527 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PRKDCP78527 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC14.74□□□□□ -0.05
PRKDCP78527 HMGN1P19-201ENST00000436976 333 ntBASIC14.74□□□□□ -0.05
PRKDCP78527 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PRKDCP78527 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PRKDCP78527 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PRKDCP78527 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PRKDCP78527 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PRKDCP78527 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC14.74□□□□□ -0.05
PRKDCP78527 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.74□□□□□ -0.05
PRKDCP78527 HYMAI.1-201ENST00000620949 238 ntBASIC14.74□□□□□ -0.05
PRKDCP78527 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
PRKDCP78527 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC14.74□□□□□ -0.05
PRKDCP78527 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC14.74□□□□□ -0.05
PRKDCP78527 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC14.73□□□□□ -0.05
PRKDCP78527 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC14.73□□□□□ -0.05
PRKDCP78527 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC14.73□□□□□ -0.05
PRKDCP78527 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
PRKDCP78527 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 FXN-203ENST00000396366 922 ntTSL 2 BASIC14.73□□□□□ -0.05
PRKDCP78527 AL390719.1-204ENST00000412397 1219 ntBASIC14.73□□□□□ -0.05
PRKDCP78527 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC14.73□□□□□ -0.05
PRKDCP78527 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.73□□□□□ -0.05
PRKDCP78527 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
PRKDCP78527 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC14.73□□□□□ -0.05
PRKDCP78527 AC104692.2-201ENST00000603054 253 ntBASIC14.73□□□□□ -0.05
PRKDCP78527 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC14.73□□□□□ -0.05
PRKDCP78527 AC083849.1-201ENST00000615227 514 ntBASIC14.73□□□□□ -0.05
PRKDCP78527 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC14.73□□□□□ -0.05
PRKDCP78527 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
PRKDCP78527 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
PRKDCP78527 PREB-202ENST00000406567 1910 ntTSL 5 BASIC14.73□□□□□ -0.05
PRKDCP78527 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC14.73□□□□□ -0.05
PRKDCP78527 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PRKDCP78527 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC14.73□□□□□ -0.05
PRKDCP78527 AP002982.1-201ENST00000492365 877 ntBASIC14.73□□□□□ -0.05
PRKDCP78527 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC14.73□□□□□ -0.05
PRKDCP78527 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 COMT-203ENST00000403184 2217 ntTSL 2 BASIC14.72□□□□□ -0.05
PRKDCP78527 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC14.72□□□□□ -0.05
PRKDCP78527 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PRKDCP78527 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.72□□□□□ -0.05
PRKDCP78527 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
PRKDCP78527 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
PRKDCP78527 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC14.72□□□□□ -0.05
PRKDCP78527 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC14.72□□□□□ -0.05
PRKDCP78527 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms