Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CX3CL1P78423 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CX3CL1P78423 CYP2T1P-201ENST00000432607 1285 ntBASIC16.22■□□□□ 0.19
CX3CL1P78423 AC026185.1-201ENST00000445748 174 ntBASIC16.22■□□□□ 0.19
CX3CL1P78423 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CX3CL1P78423 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.22■□□□□ 0.19
CX3CL1P78423 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.22■□□□□ 0.19
CX3CL1P78423 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.22■□□□□ 0.19
CX3CL1P78423 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CX3CL1P78423 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CX3CL1P78423 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CX3CL1P78423 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CX3CL1P78423 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CX3CL1P78423 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CX3CL1P78423 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.22■□□□□ 0.19
CX3CL1P78423 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CX3CL1P78423 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CX3CL1P78423 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CX3CL1P78423 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.21■□□□□ 0.19
CX3CL1P78423 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CL1P78423 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CX3CL1P78423 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CL1P78423 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.21■□□□□ 0.19
CX3CL1P78423 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CL1P78423 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.21■□□□□ 0.19
CX3CL1P78423 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CL1P78423 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CX3CL1P78423 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CL1P78423 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CL1P78423 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC16.21■□□□□ 0.19
CX3CL1P78423 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.21■□□□□ 0.19
CX3CL1P78423 MIR2861-201ENST00000636310 90 ntBASIC16.21■□□□□ 0.19
CX3CL1P78423 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CX3CL1P78423 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CX3CL1P78423 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CL1P78423 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CL1P78423 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CX3CL1P78423 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CL1P78423 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.21■□□□□ 0.19
CX3CL1P78423 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
CX3CL1P78423 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CX3CL1P78423 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CX3CL1P78423 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
CX3CL1P78423 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.21■□□□□ 0.18
CX3CL1P78423 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CX3CL1P78423 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.21■□□□□ 0.18
CX3CL1P78423 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
CX3CL1P78423 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CX3CL1P78423 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
CX3CL1P78423 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.2■□□□□ 0.18
CX3CL1P78423 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CX3CL1P78423 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.2■□□□□ 0.18
CX3CL1P78423 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
CX3CL1P78423 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CX3CL1P78423 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
CX3CL1P78423 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CL1P78423 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.2■□□□□ 0.18
CX3CL1P78423 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
CX3CL1P78423 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
CX3CL1P78423 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.2■□□□□ 0.18
CX3CL1P78423 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.2■□□□□ 0.18
CX3CL1P78423 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.2■□□□□ 0.18
CX3CL1P78423 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.2■□□□□ 0.18
CX3CL1P78423 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC16.2■□□□□ 0.18
CX3CL1P78423 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CL1P78423 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CL1P78423 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.2■□□□□ 0.18
CX3CL1P78423 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CX3CL1P78423 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CL1P78423 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CL1P78423 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CX3CL1P78423 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CX3CL1P78423 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.19■□□□□ 0.18
CX3CL1P78423 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CL1P78423 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
CX3CL1P78423 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CL1P78423 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CL1P78423 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CL1P78423 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.19■□□□□ 0.18
CX3CL1P78423 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CL1P78423 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CX3CL1P78423 CYP21A1P-202ENST00000354927 1481 ntBASIC16.19■□□□□ 0.18
CX3CL1P78423 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CL1P78423 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CL1P78423 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.19■□□□□ 0.18
CX3CL1P78423 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CL1P78423 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CX3CL1P78423 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CL1P78423 RAP2CP1-201ENST00000605103 478 ntBASIC16.19■□□□□ 0.18
CX3CL1P78423 OR10C1-204ENST00000622521 1039 ntBASIC16.19■□□□□ 0.18
CX3CL1P78423 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC16.19■□□□□ 0.18
CX3CL1P78423 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC16.19■□□□□ 0.18
CX3CL1P78423 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
CX3CL1P78423 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CX3CL1P78423 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.18■□□□□ 0.18
CX3CL1P78423 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CL1P78423 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CL1P78423 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CX3CL1P78423 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CX3CL1P78423 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms