Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A4P53420 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A4P53420 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A4P53420 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A4P53420 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A4P53420 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A4P53420 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.75■■□□□ 1.07
COL4A4P53420 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A4P53420 AC079598.2-202ENST00000546624 1451 ntBASIC21.75■■□□□ 1.07
COL4A4P53420 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A4P53420 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A4P53420 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A4P53420 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
COL4A4P53420 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A4P53420 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A4P53420 PGM5P4-201ENST00000421970 445 ntBASIC21.74■■□□□ 1.07
COL4A4P53420 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A4P53420 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
COL4A4P53420 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A4P53420 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A4P53420 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
COL4A4P53420 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.74■■□□□ 1.07
COL4A4P53420 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
COL4A4P53420 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.74■■□□□ 1.07
COL4A4P53420 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.74■■□□□ 1.07
COL4A4P53420 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.74■■□□□ 1.07
COL4A4P53420 AL024507.2-201ENST00000606070 2574 ntBASIC21.74■■□□□ 1.07
COL4A4P53420 AL031963.3-201ENST00000606441 850 ntBASIC21.74■■□□□ 1.07
COL4A4P53420 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.74■■□□□ 1.07
COL4A4P53420 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
COL4A4P53420 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A4P53420 FEM1AP4-201ENST00000443167 1987 ntBASIC21.73■■□□□ 1.07
COL4A4P53420 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A4P53420 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A4P53420 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A4P53420 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A4P53420 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A4P53420 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
COL4A4P53420 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A4P53420 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A4P53420 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.73■■□□□ 1.07
COL4A4P53420 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.73■■□□□ 1.07
COL4A4P53420 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
COL4A4P53420 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A4P53420 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A4P53420 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
COL4A4P53420 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.73■■□□□ 1.07
COL4A4P53420 AC026310.3-201ENST00000625186 2373 ntBASIC21.73■■□□□ 1.07
COL4A4P53420 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.73■■□□□ 1.07
COL4A4P53420 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 FAM197Y1-201ENST00000421178 764 ntBASIC21.72■■□□□ 1.07
COL4A4P53420 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.72■■□□□ 1.07
COL4A4P53420 AL355355.2-201ENST00000442321 338 ntBASIC21.72■■□□□ 1.07
COL4A4P53420 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.72■■□□□ 1.07
COL4A4P53420 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.72■■□□□ 1.07
COL4A4P53420 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.72■■□□□ 1.07
COL4A4P53420 AP000525.1-201ENST00000608286 694 ntBASIC21.72■■□□□ 1.07
COL4A4P53420 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.72■■□□□ 1.07
COL4A4P53420 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
COL4A4P53420 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
COL4A4P53420 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.72■■□□□ 1.07
COL4A4P53420 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
COL4A4P53420 KRT16P5-201ENST00000455284 522 ntBASIC21.72■■□□□ 1.07
COL4A4P53420 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.72■■□□□ 1.07
COL4A4P53420 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
COL4A4P53420 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.72■■□□□ 1.07
COL4A4P53420 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL4A4P53420 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL4A4P53420 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.71■■□□□ 1.07
COL4A4P53420 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL4A4P53420 AL390719.1-204ENST00000412397 1219 ntBASIC21.71■■□□□ 1.07
COL4A4P53420 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.71■■□□□ 1.07
COL4A4P53420 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.71■■□□□ 1.07
COL4A4P53420 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.71■■□□□ 1.07
COL4A4P53420 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.71■■□□□ 1.07
COL4A4P53420 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL4A4P53420 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL4A4P53420 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL4A4P53420 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
COL4A4P53420 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.7■■□□□ 1.07
COL4A4P53420 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A4P53420 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.7■■□□□ 1.06
COL4A4P53420 UNC93B2-201ENST00000285383 730 ntBASIC21.7■■□□□ 1.06
COL4A4P53420 SLC25A3P1-201ENST00000443844 931 ntBASIC21.7■■□□□ 1.06
COL4A4P53420 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
COL4A4P53420 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.06
COL4A4P53420 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
COL4A4P53420 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A4P53420 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
COL4A4P53420 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A4P53420 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms