Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CR1P49238 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CR1P49238 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CR1P49238 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CR1P49238 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.7■□□□□ 0.42
CX3CR1P49238 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CR1P49238 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC17.7■□□□□ 0.42
CX3CR1P49238 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.7■□□□□ 0.42
CX3CR1P49238 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.7■□□□□ 0.42
CX3CR1P49238 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC17.7■□□□□ 0.42
CX3CR1P49238 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.7■□□□□ 0.42
CX3CR1P49238 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC17.7■□□□□ 0.42
CX3CR1P49238 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CR1P49238 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC17.7■□□□□ 0.42
CX3CR1P49238 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.7■□□□□ 0.42
CX3CR1P49238 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.7■□□□□ 0.42
CX3CR1P49238 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CX3CR1P49238 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CR1P49238 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CX3CR1P49238 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CR1P49238 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CX3CR1P49238 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.7■□□□□ 0.42
CX3CR1P49238 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.7■□□□□ 0.42
CX3CR1P49238 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CR1P49238 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CX3CR1P49238 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
CX3CR1P49238 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CX3CR1P49238 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.69■□□□□ 0.42
CX3CR1P49238 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
CX3CR1P49238 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.69■□□□□ 0.42
CX3CR1P49238 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 AC016769.1-201ENST00000409132 1010 ntBASIC17.69■□□□□ 0.42
CX3CR1P49238 PGM5P4-201ENST00000421970 445 ntBASIC17.69■□□□□ 0.42
CX3CR1P49238 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.69■□□□□ 0.42
CX3CR1P49238 AC013268.1-206ENST00000638368 961 ntBASIC17.69■□□□□ 0.42
CX3CR1P49238 AC112229.1-201ENST00000639295 961 ntBASIC17.69■□□□□ 0.42
CX3CR1P49238 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.69■□□□□ 0.42
CX3CR1P49238 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
CX3CR1P49238 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
CX3CR1P49238 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CX3CR1P49238 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CR1P49238 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.68■□□□□ 0.42
CX3CR1P49238 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CX3CR1P49238 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
CX3CR1P49238 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 DPP3P2-201ENST00000416030 1696 ntBASIC17.68■□□□□ 0.42
CX3CR1P49238 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.68■□□□□ 0.42
CX3CR1P49238 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.68■□□□□ 0.42
CX3CR1P49238 HSCB-202ENST00000398941 955 ntTSL 2 BASIC17.68■□□□□ 0.42
CX3CR1P49238 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC17.68■□□□□ 0.42
CX3CR1P49238 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CX3CR1P49238 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.68■□□□□ 0.42
CX3CR1P49238 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CX3CR1P49238 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CR1P49238 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CR1P49238 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CR1P49238 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CR1P49238 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CR1P49238 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CX3CR1P49238 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CR1P49238 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CR1P49238 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CX3CR1P49238 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CR1P49238 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.67■□□□□ 0.42
CX3CR1P49238 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CR1P49238 AC087633.2-202ENST00000565166 1439 ntBASIC17.67■□□□□ 0.42
CX3CR1P49238 AC007322.4-201ENST00000509611 723 ntBASIC17.67■□□□□ 0.42
CX3CR1P49238 RARRES2P6-201ENST00000567333 442 ntBASIC17.67■□□□□ 0.42
CX3CR1P49238 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
CX3CR1P49238 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CR1P49238 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CX3CR1P49238 WWOX-218ENST00000627394 894 ntTSL 5 BASIC17.67■□□□□ 0.42
CX3CR1P49238 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CR1P49238 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms