Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCNFP41002 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.27■□□□□ 0.84
CCNFP41002 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.27■□□□□ 0.84
CCNFP41002 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.27■□□□□ 0.84
CCNFP41002 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.27■□□□□ 0.84
CCNFP41002 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCNFP41002 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCNFP41002 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCNFP41002 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCNFP41002 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCNFP41002 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.27■□□□□ 0.83
CCNFP41002 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
CCNFP41002 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCNFP41002 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.27■□□□□ 0.83
CCNFP41002 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.26■□□□□ 0.83
CCNFP41002 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNFP41002 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNFP41002 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNFP41002 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.26■□□□□ 0.83
CCNFP41002 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.26■□□□□ 0.83
CCNFP41002 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.26■□□□□ 0.83
CCNFP41002 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.26■□□□□ 0.83
CCNFP41002 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNFP41002 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CCNFP41002 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCNFP41002 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCNFP41002 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCNFP41002 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNFP41002 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCNFP41002 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNFP41002 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCNFP41002 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CCNFP41002 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNFP41002 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.25■□□□□ 0.83
CCNFP41002 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.25■□□□□ 0.83
CCNFP41002 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.25■□□□□ 0.83
CCNFP41002 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.25■□□□□ 0.83
CCNFP41002 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.25■□□□□ 0.83
CCNFP41002 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CCNFP41002 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNFP41002 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
CCNFP41002 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNFP41002 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCNFP41002 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.25■□□□□ 0.83
CCNFP41002 RBM17P2-201ENST00000616397 1405 ntBASIC20.25■□□□□ 0.83
CCNFP41002 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNFP41002 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CCNFP41002 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.25■□□□□ 0.83
CCNFP41002 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNFP41002 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
CCNFP41002 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.24■□□□□ 0.83
CCNFP41002 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.24■□□□□ 0.83
CCNFP41002 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCNFP41002 BID-214ENST00000617586 542 ntTSL 5 BASIC20.24■□□□□ 0.83
CCNFP41002 AC010536.3-201ENST00000620306 533 ntBASIC20.24■□□□□ 0.83
CCNFP41002 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CCNFP41002 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 AC116562.4-201ENST00000641316 2276 ntBASIC20.24■□□□□ 0.83
CCNFP41002 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNFP41002 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CCNFP41002 AC116050.2-201ENST00000612102 1779 ntBASIC20.23■□□□□ 0.83
CCNFP41002 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCNFP41002 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CCNFP41002 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCNFP41002 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
CCNFP41002 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.23■□□□□ 0.83
CCNFP41002 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNFP41002 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCNFP41002 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNFP41002 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
CCNFP41002 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.23■□□□□ 0.83
CCNFP41002 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.23■□□□□ 0.83
CCNFP41002 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCNFP41002 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCNFP41002 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNFP41002 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNFP41002 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.23■□□□□ 0.83
CCNFP41002 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.23■□□□□ 0.83
CCNFP41002 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNFP41002 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.23■□□□□ 0.83
CCNFP41002 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCNFP41002 AL020996.1-203ENST00000536896 2307 ntBASIC20.22■□□□□ 0.83
CCNFP41002 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.22■□□□□ 0.83
CCNFP41002 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CCNFP41002 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCNFP41002 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.22■□□□□ 0.83
CCNFP41002 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CCNFP41002 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms