Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PTPN4P29074 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
PTPN4P29074 AC055733.4-201ENST00000638462 1354 ntBASIC20.19■□□□□ 0.82
PTPN4P29074 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN4P29074 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PTPN4P29074 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PTPN4P29074 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.18■□□□□ 0.82
PTPN4P29074 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.18■□□□□ 0.82
PTPN4P29074 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.18■□□□□ 0.82
PTPN4P29074 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
PTPN4P29074 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN4P29074 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN4P29074 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
PTPN4P29074 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.17■□□□□ 0.82
PTPN4P29074 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN4P29074 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.17■□□□□ 0.82
PTPN4P29074 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN4P29074 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.17■□□□□ 0.82
PTPN4P29074 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.17■□□□□ 0.82
PTPN4P29074 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.17■□□□□ 0.82
PTPN4P29074 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.17■□□□□ 0.82
PTPN4P29074 AP001160.3-201ENST00000601484 763 ntBASIC20.17■□□□□ 0.82
PTPN4P29074 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
PTPN4P29074 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN4P29074 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN4P29074 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN4P29074 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.17■□□□□ 0.82
PTPN4P29074 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN4P29074 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN4P29074 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN4P29074 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
PTPN4P29074 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
PTPN4P29074 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
PTPN4P29074 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.16■□□□□ 0.82
PTPN4P29074 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.16■□□□□ 0.82
PTPN4P29074 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.16■□□□□ 0.82
PTPN4P29074 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.16■□□□□ 0.82
PTPN4P29074 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.16■□□□□ 0.82
PTPN4P29074 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.16■□□□□ 0.82
PTPN4P29074 UBE2DNL-204ENST00000602536 740 ntBASIC20.16■□□□□ 0.82
PTPN4P29074 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.16■□□□□ 0.82
PTPN4P29074 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PTPN4P29074 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
PTPN4P29074 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 AP004607.7-201ENST00000527152 1677 ntBASIC20.16■□□□□ 0.82
PTPN4P29074 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.16■□□□□ 0.82
PTPN4P29074 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTPN4P29074 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
PTPN4P29074 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.15■□□□□ 0.82
PTPN4P29074 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PTPN4P29074 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 GPX1P1-201ENST00000388829 606 ntBASIC20.15■□□□□ 0.82
PTPN4P29074 AL355802.2-201ENST00000402069 882 ntBASIC20.15■□□□□ 0.82
PTPN4P29074 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
PTPN4P29074 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.15■□□□□ 0.82
PTPN4P29074 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.15■□□□□ 0.82
PTPN4P29074 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.15■□□□□ 0.82
PTPN4P29074 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.15■□□□□ 0.82
PTPN4P29074 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.15■□□□□ 0.82
PTPN4P29074 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PTPN4P29074 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.15■□□□□ 0.82
PTPN4P29074 AC231657.2-201ENST00000624556 255 ntBASIC20.15■□□□□ 0.82
PTPN4P29074 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
PTPN4P29074 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.15■□□□□ 0.82
PTPN4P29074 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTPN4P29074 AP000974.1-201ENST00000623909 2387 ntBASIC20.15■□□□□ 0.82
PTPN4P29074 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms