Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
HMGB1P09429 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.83■■□□□ 1.4
HMGB1P09429 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB1P09429 ADM-207ENST00000530439 1839 ntTSL 2 BASIC23.82■■□□□ 1.4
HMGB1P09429 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.82■■□□□ 1.4
HMGB1P09429 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB1P09429 AC105036.2-201ENST00000569468 176 ntBASIC23.82■■□□□ 1.4
HMGB1P09429 BRWD1-AS2-201ENST00000603064 1028 ntBASIC23.82■■□□□ 1.4
HMGB1P09429 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB1P09429 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
HMGB1P09429 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB1P09429 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB1P09429 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HMGB1P09429 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
HMGB1P09429 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
HMGB1P09429 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGB1P09429 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGB1P09429 PTBP1P-201ENST00000554374 1601 ntBASIC23.81■■□□□ 1.4
HMGB1P09429 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGB1P09429 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGB1P09429 MKRN4P-201ENST00000444706 1521 ntBASIC23.81■■□□□ 1.4
HMGB1P09429 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGB1P09429 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC23.81■■□□□ 1.4
HMGB1P09429 HES2-205ENST00000487437 968 ntTSL 3 BASIC23.81■■□□□ 1.4
HMGB1P09429 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.81■■□□□ 1.4
HMGB1P09429 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.81■■□□□ 1.4
HMGB1P09429 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HMGB1P09429 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
HMGB1P09429 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB1P09429 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB1P09429 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.8■■□□□ 1.4
HMGB1P09429 KRT17P1-201ENST00000399211 1546 ntBASIC23.8■■□□□ 1.4
HMGB1P09429 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23.8■■□□□ 1.4
HMGB1P09429 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB1P09429 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
HMGB1P09429 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.8■■□□□ 1.4
HMGB1P09429 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB1P09429 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.8■■□□□ 1.4
HMGB1P09429 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.8■■□□□ 1.4
HMGB1P09429 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
HMGB1P09429 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB1P09429 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HMGB1P09429 NXN-202ENST00000537628 1340 ntTSL 3 BASIC23.8■■□□□ 1.4
HMGB1P09429 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB1P09429 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB1P09429 BX119927.1-201ENST00000636596 1552 ntBASIC23.79■■□□□ 1.4
HMGB1P09429 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC23.79■■□□□ 1.4
HMGB1P09429 TCF3P1-201ENST00000423021 1937 ntBASIC23.79■■□□□ 1.4
HMGB1P09429 AL391422.3-201ENST00000603791 2761 ntBASIC23.79■■□□□ 1.4
HMGB1P09429 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB1P09429 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
HMGB1P09429 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
HMGB1P09429 LSM12P1-201ENST00000411836 588 ntBASIC23.79■■□□□ 1.4
HMGB1P09429 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.79■■□□□ 1.4
HMGB1P09429 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.79■■□□□ 1.4
HMGB1P09429 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.79■■□□□ 1.4
HMGB1P09429 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC23.79■■□□□ 1.4
HMGB1P09429 C2orf69P4-201ENST00000565394 541 ntBASIC23.79■■□□□ 1.4
HMGB1P09429 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC23.79■■□□□ 1.4
HMGB1P09429 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB1P09429 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
HMGB1P09429 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGB1P09429 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB1P09429 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB1P09429 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGB1P09429 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB1P09429 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HMGB1P09429 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.79■■□□□ 1.4
HMGB1P09429 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGB1P09429 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGB1P09429 AC006970.2-201ENST00000450065 779 ntBASIC23.78■■□□□ 1.4
HMGB1P09429 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.78■■□□□ 1.4
HMGB1P09429 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.78■■□□□ 1.4
HMGB1P09429 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGB1P09429 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGB1P09429 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
HMGB1P09429 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
HMGB1P09429 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGB1P09429 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
HMGB1P09429 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
HMGB1P09429 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
HMGB1P09429 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HMGB1P09429 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
HMGB1P09429 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
HMGB1P09429 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGB1P09429 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
HMGB1P09429 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGB1P09429 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGB1P09429 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.77■■□□□ 1.4
HMGB1P09429 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.77■■□□□ 1.4
HMGB1P09429 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC23.77■■□□□ 1.4
HMGB1P09429 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.77■■□□□ 1.4
HMGB1P09429 AL121832.2-201ENST00000610979 668 ntBASIC23.77■■□□□ 1.4
HMGB1P09429 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC23.77■■□□□ 1.4
HMGB1P09429 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
HMGB1P09429 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.77■■□□□ 1.4
HMGB1P09429 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.77■■□□□ 1.4
HMGB1P09429 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC23.77■■□□□ 1.4
HMGB1P09429 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
HMGB1P09429 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms