Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.12■□□□□ 0.97
APOEP02649 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
APOEP02649 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.12■□□□□ 0.97
APOEP02649 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.12■□□□□ 0.97
APOEP02649 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.12■□□□□ 0.97
APOEP02649 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.12■□□□□ 0.97
APOEP02649 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
APOEP02649 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.12■□□□□ 0.97
APOEP02649 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.12■□□□□ 0.97
APOEP02649 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.11■□□□□ 0.97
APOEP02649 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
APOEP02649 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
APOEP02649 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
APOEP02649 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
APOEP02649 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
APOEP02649 MYC-209ENST00000641252 345 ntBASIC21.11■□□□□ 0.97
APOEP02649 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
APOEP02649 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
APOEP02649 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
APOEP02649 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
APOEP02649 KRT8P36-201ENST00000489121 1440 ntBASIC21.11■□□□□ 0.97
APOEP02649 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.11■□□□□ 0.97
APOEP02649 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
APOEP02649 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
APOEP02649 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.1■□□□□ 0.97
APOEP02649 FP700111.2-201ENST00000619190 1892 ntBASIC21.1■□□□□ 0.97
APOEP02649 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.1■□□□□ 0.97
APOEP02649 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
APOEP02649 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.1■□□□□ 0.97
APOEP02649 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.1■□□□□ 0.97
APOEP02649 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
APOEP02649 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
APOEP02649 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
APOEP02649 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.09■□□□□ 0.97
APOEP02649 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.09■□□□□ 0.97
APOEP02649 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.09■□□□□ 0.97
APOEP02649 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.09■□□□□ 0.97
APOEP02649 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.09■□□□□ 0.97
APOEP02649 AC083880.1-201ENST00000608266 535 ntBASIC21.09■□□□□ 0.97
APOEP02649 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
APOEP02649 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
APOEP02649 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
APOEP02649 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.08■□□□□ 0.97
APOEP02649 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
APOEP02649 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
APOEP02649 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
APOEP02649 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.08■□□□□ 0.97
APOEP02649 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.08■□□□□ 0.97
APOEP02649 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.08■□□□□ 0.97
APOEP02649 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
APOEP02649 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
APOEP02649 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
APOEP02649 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
APOEP02649 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
APOEP02649 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
APOEP02649 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
APOEP02649 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
APOEP02649 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.07■□□□□ 0.96
APOEP02649 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.07■□□□□ 0.96
APOEP02649 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.07■□□□□ 0.96
APOEP02649 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.07■□□□□ 0.96
APOEP02649 KRT18P6-201ENST00000555540 1265 ntBASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms