Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.65■□□□□ 0.58
NKX2-2O95096 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX2-2O95096 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX2-2O95096 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.65■□□□□ 0.58
NKX2-2O95096 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
NKX2-2O95096 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX2-2O95096 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.65■□□□□ 0.58
NKX2-2O95096 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX2-2O95096 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NKX2-2O95096 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX2-2O95096 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX2-2O95096 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NKX2-2O95096 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX2-2O95096 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX2-2O95096 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NKX2-2O95096 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NKX2-2O95096 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
NKX2-2O95096 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.65■□□□□ 0.58
NKX2-2O95096 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NKX2-2O95096 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
NKX2-2O95096 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
NKX2-2O95096 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
NKX2-2O95096 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-2O95096 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.64■□□□□ 0.57
NKX2-2O95096 MIPEPP3-201ENST00000412105 444 ntBASIC18.64■□□□□ 0.57
NKX2-2O95096 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.64■□□□□ 0.57
NKX2-2O95096 GUSBP6-202ENST00000438529 1198 ntBASIC18.64■□□□□ 0.57
NKX2-2O95096 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.64■□□□□ 0.57
NKX2-2O95096 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-2O95096 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-2O95096 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-2O95096 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-2O95096 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.64■□□□□ 0.57
NKX2-2O95096 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-2O95096 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-2O95096 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NKX2-2O95096 BX119927.1-201ENST00000636596 1552 ntBASIC18.64■□□□□ 0.57
NKX2-2O95096 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
NKX2-2O95096 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX2-2O95096 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX2-2O95096 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 AL391422.3-201ENST00000603791 2761 ntBASIC18.63■□□□□ 0.57
NKX2-2O95096 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX2-2O95096 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 GPX1P1-201ENST00000388829 606 ntBASIC18.63■□□□□ 0.57
NKX2-2O95096 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
NKX2-2O95096 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
NKX2-2O95096 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
NKX2-2O95096 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.63■□□□□ 0.57
NKX2-2O95096 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.63■□□□□ 0.57
NKX2-2O95096 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
NKX2-2O95096 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.63■□□□□ 0.57
NKX2-2O95096 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.63■□□□□ 0.57
NKX2-2O95096 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.63■□□□□ 0.57
NKX2-2O95096 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NKX2-2O95096 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-2O95096 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-2O95096 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
NKX2-2O95096 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-2O95096 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-2O95096 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-2O95096 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
NKX2-2O95096 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.62■□□□□ 0.57
NKX2-2O95096 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.62■□□□□ 0.57
NKX2-2O95096 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-2O95096 TSPY6P-201ENST00000448518 926 ntBASIC18.62■□□□□ 0.57
NKX2-2O95096 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.62■□□□□ 0.57
NKX2-2O95096 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
NKX2-2O95096 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-2O95096 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NKX2-2O95096 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
NKX2-2O95096 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-2O95096 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.62■□□□□ 0.57
NKX2-2O95096 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NKX2-2O95096 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-2O95096 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
NKX2-2O95096 TCF3P1-201ENST00000423021 1937 ntBASIC18.61■□□□□ 0.57
NKX2-2O95096 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-2O95096 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.61■□□□□ 0.57
NKX2-2O95096 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-2O95096 KRT8P17-201ENST00000453110 1448 ntBASIC18.61■□□□□ 0.57
NKX2-2O95096 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-2O95096 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
NKX2-2O95096 SLC29A4P1-201ENST00000398760 971 ntBASIC18.61■□□□□ 0.57
NKX2-2O95096 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.61■□□□□ 0.57
NKX2-2O95096 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.61■□□□□ 0.57
NKX2-2O95096 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
NKX2-2O95096 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-2O95096 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX2-2O95096 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX2-2O95096 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms