Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC073111.5-205ENST00000641717 521 ntBASIC19.31■□□□□ 0.68
SEMA3DO95025 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SEMA3DO95025 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
SEMA3DO95025 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SEMA3DO95025 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SEMA3DO95025 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SEMA3DO95025 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SEMA3DO95025 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
SEMA3DO95025 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SEMA3DO95025 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SEMA3DO95025 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
SEMA3DO95025 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SEMA3DO95025 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.3■□□□□ 0.68
SEMA3DO95025 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.3■□□□□ 0.68
SEMA3DO95025 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.3■□□□□ 0.68
SEMA3DO95025 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.3■□□□□ 0.68
SEMA3DO95025 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.3■□□□□ 0.68
SEMA3DO95025 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.3■□□□□ 0.68
SEMA3DO95025 CYP2T3P-201ENST00000601990 817 ntBASIC19.3■□□□□ 0.68
SEMA3DO95025 AC105020.6-201ENST00000621523 1217 ntBASIC19.3■□□□□ 0.68
SEMA3DO95025 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.3■□□□□ 0.68
SEMA3DO95025 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SEMA3DO95025 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.3■□□□□ 0.68
SEMA3DO95025 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SEMA3DO95025 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
SEMA3DO95025 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.29■□□□□ 0.68
SEMA3DO95025 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 KRT18P68-201ENST00000392293 1000 ntBASIC19.29■□□□□ 0.68
SEMA3DO95025 AL512625.2-201ENST00000417533 625 ntBASIC19.29■□□□□ 0.68
SEMA3DO95025 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
SEMA3DO95025 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.29■□□□□ 0.68
SEMA3DO95025 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
SEMA3DO95025 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.29■□□□□ 0.68
SEMA3DO95025 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.29■□□□□ 0.68
SEMA3DO95025 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SEMA3DO95025 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.29■□□□□ 0.68
SEMA3DO95025 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SEMA3DO95025 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.28■□□□□ 0.68
SEMA3DO95025 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SEMA3DO95025 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SEMA3DO95025 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.28■□□□□ 0.68
SEMA3DO95025 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SEMA3DO95025 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SEMA3DO95025 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.28■□□□□ 0.68
SEMA3DO95025 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
SEMA3DO95025 AC133552.2-202ENST00000575694 574 ntBASIC19.28■□□□□ 0.68
SEMA3DO95025 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.28■□□□□ 0.68
SEMA3DO95025 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.28■□□□□ 0.68
SEMA3DO95025 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.28■□□□□ 0.68
SEMA3DO95025 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SEMA3DO95025 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SEMA3DO95025 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.28■□□□□ 0.68
SEMA3DO95025 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SEMA3DO95025 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SEMA3DO95025 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.28■□□□□ 0.68
SEMA3DO95025 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SEMA3DO95025 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SEMA3DO95025 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SEMA3DO95025 DPP3P2-201ENST00000416030 1696 ntBASIC19.27■□□□□ 0.68
SEMA3DO95025 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SEMA3DO95025 AC010980.2-201ENST00000587099 1412 ntBASIC19.27■□□□□ 0.68
SEMA3DO95025 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.27■□□□□ 0.68
SEMA3DO95025 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SEMA3DO95025 CDCA4P2-201ENST00000441182 718 ntBASIC19.27■□□□□ 0.68
SEMA3DO95025 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.27■□□□□ 0.68
SEMA3DO95025 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.27■□□□□ 0.68
SEMA3DO95025 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.27■□□□□ 0.68
SEMA3DO95025 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
SEMA3DO95025 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SEMA3DO95025 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SEMA3DO95025 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SEMA3DO95025 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SEMA3DO95025 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SEMA3DO95025 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SEMA3DO95025 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.26■□□□□ 0.67
SEMA3DO95025 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SEMA3DO95025 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms